View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_4 (Length: 406)
Name: NF10720_low_4
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 36345465 - 36345864
Alignment:
| Q |
1 |
ctgcagcaggaggtggtgatggaagtaaatgaaaaaggtatcagaataaagaa-----tatgacgcttcaaattgaaggcgtgtctggtgtttgacaaag |
95 |
Q |
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| T |
36345465 |
ctgcagcaggaggtggtgatggaagtaaatgaaaaaggtatcagaatgaagaacctactatgacgcttcaaattgaaggcgtgttcggtgtttgacaaag |
36345564 |
T |
|
| Q |
96 |
acacatatgattatggttacatttaatttatctacattcttaaattattacaggtgtcaacgttaagtgacgtgtccgatgtatgtttctgggttattat |
195 |
Q |
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| T |
36345565 |
acacatatggttatggttacatttaatttatctacattcttaaattattacaggtgtcaacattaagtgacgtgtccgatgtatgtttctgggttattat |
36345664 |
T |
|
| Q |
196 |
tccatattagatgcatattattctattctaacacaaacattatttttaagttagtaagtatataacttgatgtatgctttgtttaatttcgctatagcta |
295 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36345665 |
tccatattagatgcatattattctattctaacacaaacattatttttaagttagtaagtatataacttgatgtatgctttgtttaatttcgctatagcta |
36345764 |
T |
|
| Q |
296 |
gtgaatgctatgcgatacaagaaagtttagacaacttttaattaatgaatgtatagagtagcaatgtgttagttctagaacctaagctactattgatgtc |
395 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36345765 |
gtgaatgctatgtgatacaagaaagtttagacaacttttaattaatgaatgtatagagtagcaatgtgttagttctagaacctaagctactattgatgtc |
36345864 |
T |
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