View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10720_low_7 (Length: 386)
Name: NF10720_low_7
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 13629439 - 13629328
Alignment:
| Q |
66 |
atatattggaatatgcaacacaacatactttacacctgaaaaattgttgcttaaagtttcagtcatagttttattggaaatgctaaagaatagaaatttt |
165 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13629439 |
atatattggaatatgcaagacagcgtactttacacctgaaaaatcgttgcttaaagttttagtcatagttttattggaaatgctaaagaatagaaatttt |
13629340 |
T |
|
| Q |
166 |
atattgaaaatt |
177 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13629339 |
atattgaaaatt |
13629328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 13729851 - 13729740
Alignment:
| Q |
66 |
atatattggaatatgcaacacaacatactttacacctgaaaaattgttgcttaaagtttcagtcatagttttattggaaatgctaaagaatagaaatttt |
165 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13729851 |
atatattggaatatgcaagacagcgtactttacacctgaaaaatcgttgcttaaagttttagtcatagttttattggaaatgctaaagaatagaaatttt |
13729752 |
T |
|
| Q |
166 |
atattgaaaatt |
177 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13729751 |
atattgaaaatt |
13729740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 245 - 370
Target Start/End: Complemental strand, 13628952 - 13628835
Alignment:
| Q |
245 |
ttagcacaaccctagttttattgtttttactacggtttgatattgttgtctaaattgctttttattgtaactttgctccttttacctagatcaataatcg |
344 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
13628952 |
ttagcataaccctagttttattggttttactacggtttgatattgttgtctaaattgctttttattgtaactttgcaccttttacctagat--------g |
13628861 |
T |
|
| Q |
345 |
tattttcagattttgtgcgataaaaa |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13628860 |
tattttcagattttgtgcgataaaaa |
13628835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 245 - 370
Target Start/End: Complemental strand, 13729364 - 13729247
Alignment:
| Q |
245 |
ttagcacaaccctagttttattgtttttactacggtttgatattgttgtctaaattgctttttattgtaactttgctccttttacctagatcaataatcg |
344 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
13729364 |
ttagcataaccctagttttattggttttactacggtttgatattgttgtctaaattgctttttattgtaactttgcaccttttacctagat--------g |
13729273 |
T |
|
| Q |
345 |
tattttcagattttgtgcgataaaaa |
370 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13729272 |
tattttcagattttgtgcgataaaaa |
13729247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13629510 - 13629462
Alignment:
| Q |
1 |
acgtgatctgatctcacattttagacactttgatgaatcatgtgaatag |
49 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13629510 |
acgtgatatgttctcacattttagacacttggatgaatcatgtgaatag |
13629462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13729922 - 13729874
Alignment:
| Q |
1 |
acgtgatctgatctcacattttagacactttgatgaatcatgtgaatag |
49 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13729922 |
acgtgatatgttctcacattttagacacttggatgaatcatgtgaatag |
13729874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University