View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10720_low_8 (Length: 386)
Name: NF10720_low_8
Description: NF10720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10720_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 51010796 - 51010444
Alignment:
| Q |
19 |
gaagttccttcacttgtttctgcaaatccttcacaaattcaatagcatcaccaagaatagaagctctatcaagctttgagattcttggaaccaatgaacg |
118 |
Q |
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| T |
51010796 |
gaagttccttcacttgcttctgcaaatccttcacaaattcaatagcatcaccaagaatagaagctctatcaagctttgagattcttggaaccaatgaacg |
51010697 |
T |
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| Q |
119 |
aaggttatataacctatcattcagtttcttccttctttttctctcagcaacaaggttctttgattggtttccttttccacttcttctcctatattttcca |
218 |
Q |
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| T |
51010696 |
aaggttatataacctatcattcagtttcttccttctttttctctcagcaacaaggttctttgattggtttccttttccacttcttctcctatattttcca |
51010597 |
T |
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| Q |
219 |
tcatcctcttcttcattttgatcactgcaatctgacattgaatctgatctgccaacaacattttcttgcttcttttttgtgtctaaaggatccacaaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51010596 |
tcatcctcttcttcattttgatcactgcaatctgacattgaatctgatctgccaacaacattttcttgcttcttttttgtgtctaaaggatccacaaaca |
51010497 |
T |
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| Q |
319 |
tatattgattattttctgtcatcaagcttttgttatcatgttcctcttctgtg |
371 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51010496 |
catattgattattttctgtcatcaagcttttgctatcatgttcctcttctgtg |
51010444 |
T |
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