View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_high_9 (Length: 234)
Name: NF10721_high_9
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7755365 - 7755143
Alignment:
| Q |
1 |
ctttgatatctctcattcttcatcttgtcattctatgcagctatgaatctgactttattgaaaagattgtcagagatatctctactaaactaccgaccgt |
100 |
Q |
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| T |
7755365 |
ctttgatatctctcattcttcatcttgtcattctatgcagctatgaatctgagtttattgaaaagattgtcagagatatctctactaaactaccgaccgt |
7755266 |
T |
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| Q |
101 |
gcctttacaaatcaaacacctagtcggcctcaatactcgtttcaaacaggtgaaatctattattgatatcaactctagtgaacgtatttgcatgttggga |
200 |
Q |
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| T |
7755265 |
gcctttacaaatcaaacacctagtcggcctcaatactcgtttcaaacaggtgaaatctattattgatatcaactctagtgaacgtatttgcatgttggga |
7755166 |
T |
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| Q |
201 |
atttacggagctggcggaatagg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
7755165 |
atttacggagctggcggaatagg |
7755143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 7838871 - 7838662
Alignment:
| Q |
11 |
tctcattcttcatcttgtcattctatgcagctatgaatctgactttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaa |
110 |
Q |
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| T |
7838871 |
tctcattcatcatattgtatttctatgcagctatgaatctgagtttattgagaagattgtgagagacatctcagctaaactacctcccacgcctttacaa |
7838772 |
T |
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| Q |
111 |
atcaaacacctagtcggcctcaatactcgtttcaaacaggtgaaatctattattgatatcaactctagtgaacgtatttgcatgttgggaatttacggag |
210 |
Q |
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| T |
7838771 |
attaaacacctagttggactcgattctcgtttcgaacaggtgaaatctcttattaatattgattc---tgatgttgtttgcatgttgggaatttatggag |
7838675 |
T |
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| Q |
211 |
ctggcggaatagg |
223 |
Q |
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|||| |||||||| |
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| T |
7838674 |
ctggtggaatagg |
7838662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 7762436 - 7762251
Alignment:
| Q |
38 |
cagctatgaatctgactttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaaatcaaacacctagtcggcctcaatact |
137 |
Q |
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||||||||||| ||| |||||||| |||||||||| ||| ||||| |||||||||| || | ||||||||||| |||||||||||||| ||| || || |
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| T |
7762436 |
cagctatgaatatgagtttattgagaagattgtcaaagagatctcagctaaactacctcccatacctttacaaattaaacacctagtcggactcgattct |
7762337 |
T |
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| Q |
138 |
cgtttcaaacaggtgaaatctattattgatatcaactctagtgaacgtatttgcatgttgggaatttacggagctggcggaatagg |
223 |
Q |
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| T |
7762336 |
cgtttcgaacaggtgaagtctcttattgataccaattctgatgatgctgtttgcatgttggaaatctatggaggtggtggaatagg |
7762251 |
T |
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