View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10721_low_10 (Length: 306)

Name: NF10721_low_10
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10721_low_10
NF10721_low_10
[»] scaffold0277 (2 HSPs)
scaffold0277 (38-305)||(1760-2018)
scaffold0277 (38-289)||(10726-10965)
[»] chr6 (66 HSPs)
chr6 (38-285)||(26952471-26952712)
chr6 (26-305)||(28795242-28795509)
chr6 (30-289)||(27657785-27658055)
chr6 (23-289)||(26625981-26626254)
chr6 (23-191)||(26638358-26638529)
chr6 (23-289)||(26731958-26732231)
chr6 (23-191)||(26744324-26744495)
chr6 (38-289)||(28789234-28789473)
chr6 (23-190)||(26658930-26659097)
chr6 (23-190)||(26764901-26765068)
chr6 (38-131)||(26851542-26851635)
chr6 (23-127)||(25077031-25077135)
chr6 (38-289)||(26649325-26649582)
chr6 (38-289)||(26755293-26755550)
chr6 (38-289)||(27590182-27590440)
chr6 (38-159)||(27674611-27674732)
chr6 (16-174)||(31287555-31287716)
chr6 (149-258)||(31290316-31290426)
chr6 (40-191)||(26876514-26876665)
chr6 (38-112)||(26826914-26826988)
chr6 (38-131)||(27662425-27662521)
chr6 (39-305)||(25491203-25491471)
chr6 (38-127)||(27715553-27715642)
chr6 (50-174)||(26887763-26887887)
chr6 (146-289)||(27601883-27602037)
chr6 (38-127)||(26805540-26805629)
chr6 (38-132)||(26061579-26061671)
chr6 (38-132)||(26081549-26081641)
chr6 (38-112)||(27695623-27695697)
chr6 (209-274)||(26961975-26962040)
chr6 (224-288)||(26886959-26887023)
chr6 (82-201)||(25080249-25080368)
chr6 (56-119)||(25548000-25548063)
chr6 (56-111)||(26058947-26059002)
chr6 (56-111)||(26078917-26078972)
chr6 (227-289)||(26851359-26851421)
chr6 (227-289)||(27662624-27662686)
chr6 (39-121)||(27681981-27682063)
chr6 (39-112)||(27608164-27608237)
chr6 (233-289)||(27608378-27608434)
chr6 (233-289)||(27681806-27681862)
chr6 (56-111)||(25486398-25486453)
chr6 (56-111)||(25582735-25582790)
chr6 (41-112)||(26962131-26962202)
chr6 (209-260)||(26980287-26980338)
chr6 (235-289)||(26805350-26805404)
chr6 (64-201)||(26808407-26808544)
chr6 (233-288)||(25513725-25513780)
chr6 (233-288)||(25547830-25547885)
chr6 (233-288)||(25582557-25582612)
chr6 (233-288)||(26058769-26058824)
chr6 (233-288)||(26078739-26078794)
chr6 (233-288)||(26145847-26145902)
chr6 (38-80)||(27528709-27528751)
chr6 (235-289)||(27674834-27674888)
chr6 (235-289)||(27695851-27695905)
chr6 (232-288)||(26638252-26638311)
chr6 (232-288)||(26744218-26744277)
chr6 (233-289)||(27715758-27715814)
chr6 (51-111)||(28246414-28246474)
chr6 (39-111)||(28525284-28525356)
chr6 (82-112)||(27659449-27659479)
chr6 (39-121)||(28142674-28142756)
chr6 (240-288)||(25076743-25076791)
chr6 (240-288)||(25485840-25485888)
chr6 (40-80)||(27425032-27425072)
[»] scaffold0419 (1 HSPs)
scaffold0419 (38-305)||(10368-10623)
[»] chr1 (5 HSPs)
chr1 (20-127)||(265360-265467)
chr1 (38-132)||(28129715-28129809)
chr1 (235-288)||(265591-265644)
chr1 (38-111)||(26139022-26139095)
chr1 (38-132)||(28124684-28124778)
[»] chr2 (1 HSPs)
chr2 (27-124)||(17990178-17990275)
[»] chr4 (14 HSPs)
chr4 (38-289)||(18696503-18696762)
chr4 (224-289)||(18652772-18652837)
chr4 (224-289)||(18676854-18676919)
chr4 (224-289)||(18686903-18686968)
chr4 (224-289)||(18721368-18721433)
chr4 (20-111)||(18676636-18676727)
chr4 (20-187)||(18652554-18652727)
chr4 (20-111)||(18721150-18721241)
chr4 (27-111)||(18686686-18686770)
chr4 (20-111)||(18728575-18728666)
chr4 (224-289)||(18682056-18682121)
chr4 (240-289)||(18728806-18728855)
chr4 (224-289)||(18726288-18726352)
chr4 (40-80)||(18076483-18076523)
[»] scaffold0349 (2 HSPs)
scaffold0349 (38-127)||(16303-16392)
scaffold0349 (233-289)||(16131-16187)
[»] chr8 (3 HSPs)
chr8 (21-112)||(29270872-29270963)
chr8 (240-289)||(22024125-22024174)
chr8 (233-289)||(29271097-29271153)
[»] scaffold0038 (1 HSPs)
scaffold0038 (51-111)||(46576-46636)
[»] scaffold0019 (1 HSPs)
scaffold0019 (51-111)||(55294-55354)
[»] scaffold0003 (1 HSPs)
scaffold0003 (40-80)||(62291-62331)


Alignment Details
Target: scaffold0277 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 38 - 305
Target Start/End: Original strand, 1760 - 2018
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |   | |||| |||||||||    
T  1760 agaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcactgaagtttgggaaacgaaaa 1859  T
Q  138 agagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatatattgcaggataaa 237  Q
    ||| | |||||||||| |||||  |||||||||||||||||||||||| |||||||||  ||| |      ||||  ||| |||||||||||| |||||     
T  1860 agaatgcatccagcctcatgtagcttctgttagtttagaataagatatgttacattatcgattgt------atatgtaatactatatattgcaagataa- 1952  T
Q  238 acaacaacaaacctgactcaataactttcctctacttgaggaactcaatgatgtccatctcattgcag 305  Q
      ||||||||||||||||||||| | ||| ||||||||| |||||||||||| | |||| ||||||||    
T  1953 --aacaacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgcag 2018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 10726 - 10965
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |   | |||| ||||   ||    
T  10726 agaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcactgaagtttgggaaac---aa 10822  T
Q  138 agagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatatattgcaggataaa 237  Q
    | | | |||||||||| || ||  |||||||||||||||||||||||| |||||||||  ||| |      ||||  ||| |||||||||||| |||||     
T  10823 atattgcatccagcctcatttagcttctgttagtttagaataagatatgttacattatcgattgt------atatgtaatactatatattgcaagataa- 10915  T
Q  238 acaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
      ||||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  10916 --aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgat 10965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 66)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 26952712 - 26952471
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||  | |||| ||| ||| |    
T  26952712 agaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttgggaaatgaata 26952613  T
Q  138 agagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatatattgcaggataaa 237  Q
       || ||||||||||| | ||  |||||| ||||||||||||||||| ||| |||||  |||||      ||||||||| |||||||||||| ||||||    
T  26952612 taggtgcatccagccttgtttagtttctgtaagtttagaataagatatgttaaattatcgattat------atatcaaatactatatattgcaagataaa 26952519  T
Q  238 acaacaacaaacctgactcaataactttcctctacttgaggaactcaa 285  Q
    ||||||||||||||||||||||| | ||| |||||||| |||||||||    
T  26952518 acaacaacaaacctgactcaatagcattcttctacttgcggaactcaa 26952471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 305
Target Start/End: Complemental strand, 28795509 - 28795242
Alignment:
Q  26 aatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggtt 125  Q
    ||||||| ||| ||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||  |   | ||    
T  28795509 aatagaaataatagaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcactgaagttt 28795410  T
Q  126 ggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatata 225  Q
    || |||||   || | | |||||||||| |||||  ||||||||||||||||||||||||||||||||||  ||| |      ||||  ||| || ||||    
T  28795409 gggaaacg---aatattgcatccagcctcatgtagcttctgttagtttagaataagatatattacattatcgattgt------atatgtaatactctata 28795319  T
Q  226 ttgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgatgtccatctcattgcag 305  Q
    ||||| |||||   ||||||||||||||||||||| | ||| |||||||||||||||||||||| | |||| ||||||||    
T  28795318 ttgcaagataa---aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcag 28795242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 289
Target Start/End: Original strand, 27657785 - 27658055
Alignment:
Q  30 gaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtct-cccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggc 128  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| ||| || || |||      
T  27657785 gaagtaacagaagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcccctcttttacgtttgag 27657884  T
Q  129 aaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattacat-------tatga---attataaatcaatatcaaatt 218  Q
    ||||||| |   || |||||||| | || ||  ||||||| |||||||||||||||||||||||       |||||   |||||| |||||||||||||     
T  27657885 aaacgaatatcggtgcatccagcatcatttaggttctgtttgtttagaataagatatattacattgtccaatatgaaatattatatatcaatatcaaata 27657984  T
Q  219 ctatatattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
     |||||| ||||  | ||||||||||||||||||||| |||||| ||| |||| ||||| |||||| ||||    
T  27657985 atatatactgcaacacaaaacaacaacaaacctgactaaataacattcttctagttgagaaactcagtgat 27658055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 26626254 - 26625981
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattg---tgtctcccctgatttggtgctcgaaccaatctggaatcccttctgtt 119  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||||| ||| |     
T  26626254 aagaaaagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttg 26626155  T
Q  120 ccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaa---a 216  Q
     || |  | ||||||| |   || |||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||| || ||   | |        
T  26626154 gcgttatggaaacgaatattggtgcatccagcctcatgtactttctgtttgtttagaataaaatatattacattatcaattatatataaaatactatgtg 26626055  T
Q  217 ttctata-tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    || |||| ||||||| || ||||| ||||||||||||||| |||||| ||| |||| |||||||||||||||||    
T  26626054 ttttatactattgcaagaaaaaaccacaacaaacctgacttaataacattcttctagttgaggaactcaatgat 26625981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 26638529 - 26638358
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtc---tcccctgatttggtgctcgaaccaatctggaatcccttctgtt 119  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |   ||||||| |||| ||||||||||||||||||||| | ||||||    
T  26638529 aagaatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgtt 26638430  T
Q  120 ccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattaca 191  Q
    | |||||| ||||||| |  ||| |||||||| | |||||  |||||||||||||| |||||||||||||||    
T  26638429 ctggttggaaaacgaatatcagtgcatccagcttcatgtagtttctgttagtttagtataagatatattaca 26638358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 26732231 - 26731958
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattg---tgtctcccctgatttggtgctcgaaccaatctggaatcccttctgtt 119  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||||| ||| |     
T  26732231 aagaaaagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttg 26732132  T
Q  120 ccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaa---a 216  Q
     || |  | ||||||| |   || |||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||| || ||   | |        
T  26732131 gcgttatggaaacgaatattggtgcatccagcctcatgtactttctgtttgtttagaataaaatatattacattatcaattatatataaaatactatgtg 26732032  T
Q  217 ttctata-tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    || |||| ||||||| || ||||| ||||||||||||||| |||||| ||| |||| |||||||||||||||||    
T  26732031 ttttatactattgcaagaaaaaaccacaacaaacctgacttaataacattcttctagttgaggaactcaatgat 26731958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 26744495 - 26744324
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtc---tcccctgatttggtgctcgaaccaatctggaatcccttctgtt 119  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |   ||||||| |||| ||||||||||||||||||||| | ||||||    
T  26744495 aagaatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgtt 26744396  T
Q  120 ccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattaca 191  Q
    | |||||| ||||||| |  ||| |||||||| | |||||  |||||||||||||| |||||||||||||||    
T  26744395 ctggttggaaaacgaatatcagtgcatccagcttcatgtagtttctgttagtttagtataagatatattaca 26744324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 28789473 - 28789234
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |   | |||| ||   | ||    
T  28789473 agaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcactgaagtttgggaa---agaa 28789377  T
Q  138 agagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatatattgcaggataaa 237  Q
    | | | |||||||||| || ||  |||||||||||||||||||||||| |||||||||  ||| |      ||||  ||| |||||||||||| |||||     
T  28789376 ataatgcatccagcctcatttagcttctgttagtttagaataagatatgttacattatcgattgt------atatgtaatactatatattgcaagataa- 28789284  T
Q  238 acaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
      ||||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  28789283 --aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgat 28789234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 26659097 - 26658930
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccg 122  Q
    ||||||| || ||| ||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||||  || |  |||    
T  26659097 aagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcctctcagccccg 26658998  T
Q  123 gttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattac 190  Q
    ||||| |||  | || |||| |||||||||| |||||  |||||||||||||| |||| |||||||||    
T  26658997 gttggaaaataataacgagtacatccagcctcatgtagtttctgttagtttagcataaaatatattac 26658930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 26765068 - 26764901
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccg 122  Q
    ||||||| || ||| ||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||||  || |  |||    
T  26765068 aagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcctctcagccccg 26764969  T
Q  123 gttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatattac 190  Q
    ||||| |||  | || |||| |||||||||| |||||  |||||||||||||| |||| |||||||||    
T  26764968 gttggaaaataataacgagtacatccagcctcatgtagtttctgttagtttagcataaaatatattac 26764901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 26851635 - 26851542
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaa 131  Q
    ||||||||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  26851635 agaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatcccttctgttccgcttggcaaa 26851542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 25077135 - 25077031
Alignment:
Q  23 aagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccg 122  Q
    ||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||| ||| |    
T  25077135 aagaatacaagtaatagaagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccctcttttctg 25077036  T
Q  123 gttgg 127  Q
    |||||    
T  25077035 gttgg 25077031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 26649582 - 26649325
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccct---gatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacga 134  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||| ||| ||||| |||||| | ||    
T  26649582 agaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttggcataaga 26649483  T
Q  135 a---aaagagtccatccagccttatgtacattctgttagtttaga----ataagatatattacattatgaattataaatcaatatcaaattctatatatt 227  Q
    |       | | ||||||||||| ||||  ||||||||||||| |    |||| |   |||||| ||  |||||||     | || |||| | |||||||    
T  26649482 atctcctcaatgcatccagccttgtgtagtttctgttagtttatacaacataataataattacactaccaattata----tacatgaaataccatatatt 26649387  T
Q  228 gcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  26649386 gcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgat 26649325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 26755550 - 26755293
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccct---gatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacga 134  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||||||||||| ||| ||||| |||||| | ||    
T  26755550 agaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgtttggcataaga 26755451  T
Q  135 a---aaagagtccatccagccttatgtacattctgttagtttaga----ataagatatattacattatgaattataaatcaatatcaaattctatatatt 227  Q
    |       | | ||||||||||| ||||  ||||||||||||| |    |||| |   |||||| ||  |||||||     | || |||| | |||||||    
T  26755450 atctcctcaatgcatccagccttgtgtagtttctgttagtttatacaacataataataattacactaccaattata----tacatgaaataccatatatt 26755355  T
Q  228 gcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  26755354 gcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgat 26755293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 27590182 - 27590440
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| |||| |||  ||||    
T  27590182 agaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaataaaaa 27590281  T
Q  138 agagtccatccagccttatgtacattctgttagttta---gaa----taagatatatt--acattatgaattataaatcaatatcaaattctatatattg 228  Q
      ||| |||| ||||| |||||  | |||||||| ||   |||     || |||||||  ||||||| || |||||||  |||| |||| |  |||| ||    
T  27590282 taagtgcatcgagcctcatgtagttcctgttagtgtatatgaaatacaaatatatattacacattatcaaatataaatatatatgaaatac--tatagtg 27590379  T
Q  229 caggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||  | ||||||||||||||||||| ||| |||| ||| ||||||||| ||||||||||||    
T  27590380 caataaaaaacaacaacaaacctgattcattaacattcttctacttgatgaactcaatgat 27590440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 27674611 - 27674732
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||| || || |||| ||| |||||    
T  27674611 agaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctttttcgtttgggaaaagaaaa 27674710  T
Q  138 agagtccatccagccttatgta 159  Q
     |||| |||| ||||| |||||    
T  27674711 cgagtgcatcgagcctcatgta 27674732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 31287716 - 31287555
Alignment:
Q  16 gagaaataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtg---tctcccctgatttggtgctcgaaccaatctggaatccc 112  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||||||||||| |||||||   | |||||||||||||||||| ||||||| |||||||||    
T  31287716 gagaaagaagaatataagtaatagaagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatccc 31287617  T
Q  113 ttctgttccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagttta 174  Q
     ||||||||  |||| |||  |||   ||| | |||||||| |||||  |||||||||||||    
T  31287616 atctgttccatttgggaaataaaattcagtgcctccagcctcatgtagtttctgttagttta 31287555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 31290426 - 31290316
Alignment:
Q  149 agccttatgtacattctgttagtttagaataagatatattacattatgaattataa-atcaatatcaaattctatatattgcaggataaaacaacaacaa 247  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||  |||||||  ||| |||||||  |||||||||||| |||||||||||||| |    
T  31290426 agcctcatgtagtttctgttagtttagaataagatatattacattatctattataatgtcagtatcaaacactatatattgcaagataaaacaacaacta 31290327  T
Q  248 acctgactcaa 258  Q
    |||||||||||    
T  31290326 acctgactcaa 31290316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 26876665 - 26876514
Alignment:
Q  40 aagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaaag 139  Q
    ||||||| |||||||||||||||||||||||||| | |||| |||||||||| | |||||| ||||||||||| ||||||||| |||| | | ||| |      
T  26876665 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatata 26876566  T
Q  140 agtccatccagccttatgtacattctgttagtttagaataagatatattaca 191  Q
     || |||||||||| |||||  ||||| |||||||| ||  |||||||||||    
T  26876565 ggtgcatccagcctcatgtagtttctggtagtttagcatgtgatatattaca 26876514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 26826988 - 26826914
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatccc 112  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||    
T  26826988 agaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatccc 26826914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 27662425 - 27662521
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattg---tgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaa 131  Q
    ||||||||| |||||||  ||||||||||||||||   ||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  27662425 agaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctctgttccggttggcaaa 27662521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 305
Target Start/End: Original strand, 25491203 - 25491471
Alignment:
Q  39 gaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaaa 138  Q
    |||||||| | ||||| ||||||||||||||||||   |||||| |||||||||||||||||||||||||| || ||  ||  | ||||||||| ||       
T  25491203 gaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattccctcacttgtgtttggcaaacaaatct 25491302  T
Q  139 gagtccatccagccttatgtacattctgttagtttagaataagatatat--tacattatgaattataaatcaatatcaaattctatatattgcaggata- 235  Q
      || ||||||||||  ||||  | ||||||||||||||||||||||||  |||| |||||||||||      ||| |||| |||||||    | ||       
T  25491303 cggtgcatccagcctcgtgtagttgctgttagtttagaataagatatatattacactatgaattata------tatgaaatactatataaaaaaagaagt 25491396  T
Q  236 -----aaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgatgtccatctcattgcag 305  Q
         ||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||    
T  25491397 gaaggaaaaaacaacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcatctcattgcag 25491471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 27715553 - 27715642
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttgg 127  Q
    ||||||||| | |||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||| ||||| ||||||||| ||||    
T  27715553 agaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgg 27715642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 26887887 - 26887763
Alignment:
Q  50 tttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaaagagtccatcca 149  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||| ||||| |||| ||| ||||    || ||||||    
T  26887887 tttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttgggaaaagaaactctgtgcatcca 26887788  T
Q  150 gccttatgtacattctgttagttta 174  Q
    |||| || ||  |||||||||||||    
T  26887787 gcctcatatagtttctgttagttta 26887763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 146 - 289
Target Start/End: Original strand, 27601883 - 27602037
Alignment:
Q  146 tccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatatat----------tgcaggata 235  Q
    ||||||||| ||||  | ||||||||| |||||||||| |||||||||||  |||||| ||||||||||||| |||| |||          ||||  |||    
T  27601883 tccagccttgtgtagttgctgttagttaagaataagatgtattacattatcgattatatatcaatatcaaatactatctatcaaatactactgcacaata 27601982  T
Q  236 aaacaacaa-caaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||    
T  27601983 aaacaacaaacaaacctgactcaataacattcttctacttgaggaactcaatgat 27602037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 26805629 - 26805540
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttgg 127  Q
    ||||||||| | |||||||||||||||||||||||||  |||| || |||||||||| ||||||||||| ||||| ||||||||| ||||    
T  26805629 agaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccctctgttccgtttgg 26805540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 26061671 - 26061579
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaac 132  Q
    ||||||||| | |||||||||||||||| ||||||||||  || ||||||||||||  ||||||||||||||||| |||||||| ||||| ||||    
T  26061671 agaagggatttatttacgaaaccagaaaaaaattgtgtc--ccgtgatttggtgctttaaccaatctggaatcccctctgttcctgttggaaaac 26061579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 26081641 - 26081549
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaac 132  Q
    ||||||||| | |||||||||||||||| ||||||||||  || ||||||||||||  ||||||||||||||||| |||||||| ||||| ||||    
T  26081641 agaagggatttatttacgaaaccagaaaaaaattgtgtc--ccgtgatttggtgctttaaccaatctggaatcccctctgttcctgttggaaaac 26081549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 27695623 - 27695697
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatccc 112  Q
    ||||||||| | |||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  27695623 agaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatccc 27695697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 26962040 - 26961975
Alignment:
Q  209 atatcaaattctatatattgcaggataaaacaacaacaaacctgactcaataactttcctctactt 274  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||    
T  26962040 atatcaaatactatatattgcaagataaaacaacaacaaacctgactcaatagccttcttctactt 26961975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 26887023 - 26886959
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    ||||||| |||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||    
T  26887023 tattgcaagatagaacaaaaacaaacctgactcaataacattcttctacttgaggaactcaatga 26886959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 25080368 - 25080249
Alignment:
Q  82 tgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataag 181  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||| | || |   |  | || ||||| |||||  |||||||||||||| |||||    
T  25080368 tgatttggtgctcgaaccaatctagaatcccctctgttccagttggcaatcaaatattcgcgcttctagcctcatgtagtttctgttagtttagcataag 25080269  T
Q  182 atatattacattatgaatta 201  Q
    | |||||||| |||||||||    
T  25080268 aaatattacactatgaatta 25080249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 25548063 - 25548000
Alignment:
Q  56 aaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgtt 119  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||| |||||||    
T  25548063 aaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcctttctgtt 25548000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 26059002 - 26058947
Alignment:
Q  56 aaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  26059002 aaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc 26058947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 26078972 - 26078917
Alignment:
Q  56 aaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  26078972 aaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc 26078917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 26851421 - 26851359
Alignment:
Q  227 tgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    |||| |||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  26851421 tgcaagataaaacaataacaaacctgactcaataacattcttctgcttgaggaactcaatgat 26851359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 27662624 - 27662686
Alignment:
Q  227 tgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    |||| ||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27662624 tgcaagataaaataaaaacaaacctgactcaataacattcttctacttgaggaactcaatgat 27662686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 27682063 - 27681981
Alignment:
Q  39 gaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttcc 121  Q
    |||||||| | |||||||||||||||||||||| ||  ||||||| |||||||||| ||||||||||| ||||| ||| ||||    
T  27682063 gaagggatttctttacgaaaccagaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcccctctcttcc 27681981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 27608164 - 27608237
Alignment:
Q  39 gaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatccc 112  Q
    |||||||| | |||||||||||||||||||| ||||  ||||||| |||||||||| ||||||||||| |||||    
T  27608164 gaagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatccc 27608237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 27608378 - 27608434
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||    
T  27608378 ataaaacaacaactaacctgactcattaactttcttttacttgaggaactcaatgat 27608434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 27681862 - 27681806
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||    
T  27681862 ataaaacaacaactaacctgactcattaacattcttctacttgaggaactcaatgat 27681806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 25486453 - 25486398
Alignment:
Q  56 aaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||    
T  25486453 aaaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatcaggaatcc 25486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 25582790 - 25582735
Alignment:
Q  56 aaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||    
T  25582790 aaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcc 25582735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 26962202 - 26962131
Alignment:
Q  41 agggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatccc 112  Q
    |||||| ||||| ||| |||||||||||| |||||||||| |  |||||||||| |||||||||||||||||    
T  26962202 agggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatccc 26962131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 26980338 - 26980287
Alignment:
Q  209 atatcaaattctatatattgcaggataaaacaacaacaaacctgactcaata 260  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  26980338 atatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaata 26980287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 26805404 - 26805350
Alignment:
Q  235 aaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||    
T  26805404 aaaacaacaacaaacctgactcattaacattcttctacttgatgaactcaatgat 26805350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 26808544 - 26808407
Alignment:
Q  64 aagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaaagagtccatccagccttatgtacatt 163  Q
    ||||||| |||  |||| ||||||||||||||||||||||||||||||| |||||||   ||||||||| || |   ||  || |||||| |||||  ||    
T  26808544 aagaaatagtgcgtcccttgatttggtgctcgaaccaatctggaatcccctctgttctttttggcaaacaaatattggtggatacagcctcatgtaggtt 26808445  T
Q  164 ctgttagtttagaataagatatattacattatgaatta 201  Q
    |||||||||||| || | | |||| ||| |||||||||    
T  26808444 ctgttagtttagcatcaaaaatataacactatgaatta 26808407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 25513780 - 25513725
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||    
T  25513780 ataaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 25513725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 25547885 - 25547830
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||    
T  25547885 ataaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 25547830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 25582612 - 25582557
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||    
T  25582612 ataaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 25582557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 26058824 - 26058769
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||    
T  26058824 ataaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 26058769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 26078794 - 26078739
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||    
T  26078794 ataaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 26078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 26145902 - 26145847
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||    
T  26145902 ataaaaaaacaacaaacctgactcattaacattcttatacttgaggaactcaatga 26145847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 27528709 - 27528751
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctccc 80  Q
    ||||||||| |||||||||||||||||||||||||||| ||||    
T  27528709 agaagggatctttttacgaaaccagaaagaaattgtgtgtccc 27528751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 27674834 - 27674888
Alignment:
Q  235 aaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||| ||||||||||| |||| ||| ||||| ||||||||||||||||    
T  27674834 aaaacaacaactaacctgactcattaacattcttctacatgaggaactcaatgat 27674888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 27695851 - 27695905
Alignment:
Q  235 aaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||    
T  27695851 aaaacaacaacaaacctgactcattaacattcttctacatgatgaactcaatgat 27695905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 26638311 - 26638252
Alignment:
Q  232 gataaaacaacaacaa---acctgactcaataactttcctctacttgaggaactcaatga 288  Q
    ||||||||||||||||   ||||||||||||| | ||| |||||||||||||||||||||    
T  26638311 gataaaacaacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatga 26638252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 26744277 - 26744218
Alignment:
Q  232 gataaaacaacaacaa---acctgactcaataactttcctctacttgaggaactcaatga 288  Q
    ||||||||||||||||   ||||||||||||| | ||| |||||||||||||||||||||    
T  26744277 gataaaacaacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatga 26744218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 27715758 - 27715814
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||| ||||||||||| |||  ||| | ||||||||||||||||||||    
T  27715758 ataaaacaacaactaacctgactcattaatattcttttacttgaggaactcaatgat 27715814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 28246474 - 28246414
Alignment:
Q  51 ttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||||||||| ||||||||||| | |||| || ||||||| || ||||||||||||||||    
T  28246474 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 28525356 - 28525284
Alignment:
Q  39 gaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||||| ||| ||||||||||| ||||||||||| | |||| || ||||||| || ||||| ||||||||||    
T  28525356 gaagggaggttgttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatcc 28525284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 27659449 - 27659479
Alignment:
Q  82 tgatttggtgctcgaaccaatctggaatccc 112  Q
    |||||||||||||||||||||||||||||||    
T  27659449 tgatttggtgctcgaaccaatctggaatccc 27659479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 28142756 - 28142674
Alignment:
Q  39 gaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttcc 121  Q
    |||||||  |||| |||||||||||||| |||||    |||| || |||||||||| ||||| |||||||||| |||||||||    
T  28142756 gaagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcctttctgttcc 28142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 25076791 - 25076743
Alignment:
Q  240 aacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    ||||||||||||||| ||||||| ||| |||||||| |||| |||||||    
T  25076791 aacaacaaacctgacccaataacattcttctacttgtggaattcaatga 25076743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 25485888 - 25485840
Alignment:
Q  240 aacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||||||||||||||| |||| ||| | ||||||||||| |||||||    
T  25485888 aacaacaaacctgactcattaacattcttatacttgaggaattcaatga 25485840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 27425032 - 27425072
Alignment:
Q  40 aagggatgtttttacgaaaccagaaagaaattgtgtctccc 80  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  27425032 aagggatctttttacgaaaccagaaagaaatggtgtgtccc 27425072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 10623 - 10368
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |   | |||| ||   | ||    
T  10623 agaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatcccatcactgaagtttgggaa---agaa 10527  T
Q  138 agagtccatccagccttatgtacattctgttagtttagaataagatatattacattatgaattataaatcaatatcaaattctatatattgcaggataaa 237  Q
    | | | |||||||||| || ||  |||||||||||||||||||||||| |||||||||  ||| |      ||||  ||| || ||||||||| |||||     
T  10526 ataatgcatccagcctcatttagcttctgttagtttagaataagatatgttacattatcgattgt------atatgtaatactctatattgcaagataa- 10434  T
Q  238 acaacaacaaacctgactcaataactttcctctacttgaggaactcaatgatgtccatctcattgcag 305  Q
      ||||||||||||||||||||| | ||| |||||||||||||||||||||| | |||| ||||||||    
T  10433 --aacaacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcag 10368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 265360 - 265467
Alignment:
Q  20 aataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgtt 119  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||| || |||||||||| ||||||||||| ||||| ||||||    
T  265360 aataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcccctctgtt 265459  T
Q  120 ccggttgg 127  Q
    ||| ||||    
T  265460 ccgtttgg 265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 28129715 - 28129809
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaac 132  Q
    ||||||||| | ||||||||||||||||||||  || | ||||| | ||||||| ||||| ||||| |||||||| || ||||||||||||||||    
T  28129715 agaagggatttctttacgaaaccagaaagaaacagtatgtccccagctttggtgttcgaaacaatcaggaatcccctcagttccggttggcaaac 28129809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 265591 - 265644
Alignment:
Q  235 aaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatga 288  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  265591 aaaacaacaacaaacctgactcaataacattcttttacttgaggaactcaatga 265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 26139095 - 26139022
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||||||| ||||||| |||||||||||||||||| |  |||| |  ||||||||||||||||||||||||||    
T  26139095 agaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctggaatcc 26139022  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 28124684 - 28124778
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaac 132  Q
    ||||||||| | ||||||||||||||||||||  || | | ||| | ||||||| | ||||||||| |||||||| || ||||||||||||||||    
T  28124684 agaagggatttctttacgaaaccagaaagaaacagtatgttcccagttttggtgttggaaccaatcaggaatcccctcagttccggttggcaaac 28124778  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 17990178 - 17990275
Alignment:
Q  27 atagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggt 124  Q
    |||||||| | ||||||||| | ||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||| |||||    
T  17990178 atagaagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatcccttctgtcccggt 17990275  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 18696503 - 18696762
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttggcaaacgaaaa 137  Q
    ||||||||| |||||||| ||||||||||||||||  |  |||||| |||| ||||||||||||||||||||||| ||||||||| |||| |||  |||     
T  18696503 agaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccctctgttccgtttgggaaagaaaat 18696602  T
Q  138 agagtccatccagccttatgtacattctgttagtttagaataagatatat----tacattatgaattata--------aatcaatatcaaattctatata 225  Q
       || || ||||||| |||||  | |||||||||||| |||||||||||     ||||| |  ||||||        | |  ||||||||| |    ||    
T  18696603 ttggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatgtgaaatactacatatcaaatac----ta 18696698  T
Q  226 ttgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18696699 ttgcaagaaaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 18696762  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 18652772 - 18652837
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18652772 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 18652837  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 18676854 - 18676919
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18676854 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 18676919  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 18686903 - 18686968
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18686903 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 18686968  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 18721368 - 18721433
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  18721368 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 18721433  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 18676636 - 18676727
Alignment:
Q  20 aataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||| ||||||||| | ||||||||| |||||||| ||||||||||||||||  |  |||||| |||| ||||||||||||||||||||||    
T  18676636 aataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18676727  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 18652554 - 18652727
Alignment:
Q  20 aataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctgg------aatccct 113  Q
    ||||| ||||||||| | ||||||||| |||||||| ||||||||||||||||  |  |||||| |||| |||||||||||||||||      ||||||     
T  18652554 aataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcctaatcccc 18652653  T
Q  114 tctgttccggttggcaaacgaaaaagagtccatccagccttatgtacattctgttagtttagaataagatatat 187  Q
    ||||||||| |||| |||| || |   || || ||||||| |||||  | |||||||||||| |||||||||||    
T  18652654 tctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagtttagcataagatatat 18652727  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 18721150 - 18721241
Alignment:
Q  20 aataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||| |||| |||| | ||||||||| |||||||  ||||||||||||||||  |  |||||| |||||||||||||||||||||||||||    
T  18721150 aataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 18686686 - 18686770
Alignment:
Q  27 atagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    |||||||| | ||||||||| |||||||  ||||||||||||||||  |  |||||| |||| ||||||||||||||||||||||    
T  18686686 atagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 18728575 - 18728666
Alignment:
Q  20 aataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||| |||| |||| | ||||||||| |||||||  ||||||||||||||||  |  |||||| |||| ||||||||||||||||||||||    
T  18728575 aataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcc 18728666  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 18682056 - 18682121
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||| || |||||||||||||||||||||||| ||| ||| |||| ||||| |||||||||||    
T  18682056 tattgcaagaaaaaacaacaacaaacctgactcaacaacattcttctatttgagcaactcaatgat 18682121  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 18728806 - 18728855
Alignment:
Q  240 aacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  18728806 aacaacaaacctgactcaataacattcttctagttgaggaactcaatgat 18728855  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 18726288 - 18726352
Alignment:
Q  224 tattgcaggataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||| || |||||||||||||||||||||||| ||   || |||| |||||||||||||||||    
T  18726288 tattgcaagaaaaaacaacaacaaacctgactcaacaa-aatcttctatttgaggaactcaatgat 18726352  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 18076523 - 18076483
Alignment:
Q  40 aagggatgtttttacgaaaccagaaagaaattgtgtctccc 80  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  18076523 aagggatctttttacgaaaccagaaagaaatggtgtgtccc 18076483  T

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Target: scaffold0349 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 16392 - 16303
Alignment:
Q  38 agaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcccttctgttccggttgg 127  Q
    ||||||||| | |||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||| ||||| ||||||||| ||||    
T  16392 agaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcccatctgttccgtttgg 16303  T

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Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 16187 - 16131
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||| ||||||||||| |||  ||| | ||||||||||||||||||||    
T  16187 ataaaacaacaactaacctgactcattaatattcttttacttgaggaactcaatgat 16131  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 29270872 - 29270963
Alignment:
Q  21 ataagaatagaagtaacagaagggatgtttttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatccc 112  Q
    |||| |||| |||||| ||||||||| | |||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||| |||||    
T  29270872 ataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatccc 29270963  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 22024174 - 22024125
Alignment:
Q  240 aacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  22024174 aacaacaaacctgactcaataacattcttctacttgaggaactcaatgat 22024125  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 29271097 - 29271153
Alignment:
Q  233 ataaaacaacaacaaacctgactcaataactttcctctacttgaggaactcaatgat 289  Q
    ||||||||||||| ||||||||||| |||| ||| | ||||||||||||||||||||    
T  29271097 ataaaacaacaactaacctgactcattaacattcttttacttgaggaactcaatgat 29271153  T

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Target: scaffold0038 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 46636 - 46576
Alignment:
Q  51 ttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||||||||| ||||||||||| | |||| || ||||||| || ||||||||||||||||    
T  46636 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 55294 - 55354
Alignment:
Q  51 ttacgaaaccagaaagaaattgtgtctcccctgatttggtgctcgaaccaatctggaatcc 111  Q
    ||||||||||| |||||||| || | |||| || |||||||||| ||||| ||||||||||    
T  55294 ttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatcc 55354  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 62331 - 62291
Alignment:
Q  40 aagggatgtttttacgaaaccagaaagaaattgtgtctccc 80  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  62331 aagggatctttttacgaaaccagaaagaaatggtgtgtccc 62291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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