View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_11 (Length: 305)
Name: NF10721_low_11
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 54535610 - 54535911
Alignment:
| Q |
7 |
actccctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatcaata------cagacatttaaacaaagggggacact |
100 |
Q |
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| T |
54535610 |
actccctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatcaatatcaatacagacatttaaacaaagtgggacact |
54535709 |
T |
|
| Q |
101 |
tgggtcttcaaactt----------gacatgtagttagatcatagtaattgactacatataatttttgttttgagtgatgctatattatcaagcgaatga |
190 |
Q |
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| T |
54535710 |
tgggtcttcaaactttcagtatcatgacatgtagttagatcatagtaattgactacatataatttttgttttgagtgatgctatattatcaagcgaatga |
54535809 |
T |
|
| Q |
191 |
gtaattcgagagagacttgctatgtgtacagcgaagcatgacatggcaaaataattttgtccacgttttaattccagatttatagaaaatcacgtaggat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54535810 |
gtaattcgagagagacttgctatgtgtacagcgaagcatgacatggcaaaataattttgtccacgttttaattccagatttatagaaaatcacgtaggat |
54535909 |
T |
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| Q |
291 |
ct |
292 |
Q |
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|| |
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| T |
54535910 |
ct |
54535911 |
T |
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