View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_13 (Length: 276)
Name: NF10721_low_13
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_13 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6188917 - 6188642
Alignment:
| Q |
1 |
agtggttaaagtagtgatagctaattgagtatctgagatatgcgtatctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgta |
100 |
Q |
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| T |
6188917 |
agtggttaaagtagtgatagctaattgagtatctgagatatgcgtatctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgta |
6188818 |
T |
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| Q |
101 |
caaacttcactgcccagcttcatcaagctcttaacgatagaagtatcgaatcatacattgattacaatcttgttaaaggtgatgaggttggacctgctct |
200 |
Q |
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| T |
6188817 |
caaacttcactgcccagcttcatcaagctcttagcgatagaagtatcgaatcatacattgattacaatcttgttaaaggtgatgaggttggacctgctct |
6188718 |
T |
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| Q |
201 |
taccaaagcaattgatgactcacatatgtctcttgtagttttctcaaaagactatgcaacctcaaagtggtgcttg |
276 |
Q |
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| T |
6188717 |
taccaaagcaattgatgactcacatatgtctcttgtagttttctcaaaagactatgcaacttcaaagtggtgcttg |
6188642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 272
Target Start/End: Complemental strand, 6145851 - 6145612
Alignment:
| Q |
33 |
ctgagatatgcgtatctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcaagctctt |
132 |
Q |
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| T |
6145851 |
ctgagatatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctctt |
6145752 |
T |
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| Q |
133 |
aacgatagaagtatcgaatcatacattgattacaatcttgttaaaggtgatgaggttggacctgctcttaccaaagcaattgatgactcacatatgtctc |
232 |
Q |
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| T |
6145751 |
accgatagaagtatcgaatcatacattgattatagtcttgttaaaggagatgaggttggacctgctcttgccgaagcaatcaaagactcgcatatgtcta |
6145652 |
T |
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| Q |
233 |
ttgtagttttctcaaaagactatgcaacctcaaagtggtg |
272 |
Q |
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| T |
6145651 |
ttgtagttttctcaaaagactatgcaacttcaaagtggtg |
6145612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 38 - 276
Target Start/End: Complemental strand, 6180106 - 6179868
Alignment:
| Q |
38 |
atatgcgtatctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcaagctcttaacga |
137 |
Q |
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| T |
6180106 |
atatgcgtatctctcacaaaaagtatgatttattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccga |
6180007 |
T |
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| Q |
138 |
tagaagtatcgaatcatacattgattacaatcttgttaaaggtgatgaggttggacctgctcttaccaaagcaattgatgactcacatatgtctcttgta |
237 |
Q |
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||| ||||||||||||||||| ||||| | ||| ||||| |||||||| ||||||||||||||| | |||||||| | || |||||||||||||||||| |
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| T |
6180006 |
tagtagtatcgaatcatacatcgattatagtctcgttaagggtgatgaagttggacctgctcttgctaaagcaatccaagattcacatatgtctcttgta |
6179907 |
T |
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| Q |
238 |
gttttctcaaaagactatgcaacctcaaagtggtgcttg |
276 |
Q |
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| T |
6179906 |
gttttctcagaaaactatgcaacctcaaagtggtgcttg |
6179868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 6098126 - 6098048
Alignment:
| Q |
48 |
ctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcaa |
126 |
Q |
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| T |
6098126 |
ctctcacaaaaagtatgatgtattcgttagcttcaggggagaggatacacgctcaaccttcactgcacagctttatcaa |
6098048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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