View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_14 (Length: 251)
Name: NF10721_low_14
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17456106 - 17455867
Alignment:
| Q |
1 |
acaccatcgcacgagaaaaaacgttgcaagagtacccttataaacaactcttagcagataaatcctatatttggacatggatgtttctggtacccttagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17456106 |
acaccatcgcacgagaaaaaacgttgcaagagtacccttataaacaactcttagcagataaatcctatatttggacatggatgtttctggtacccttagc |
17456007 |
T |
|
| Q |
101 |
agcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccgacaacggcttttaagagatcctgaaatcatgacttctacaggtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17456006 |
agcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccgacaacggcttttaagagatcctgaaatcatgacttctacaggtaat |
17455907 |
T |
|
| Q |
201 |
caatgaccacgcgcatacttcattccctttttcagttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17455906 |
caatgaccacgcgcatacttcattccctttttcagttcat |
17455867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 17805401 - 17805267
Alignment:
| Q |
56 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga |
155 |
Q |
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||||||||||||| | || |||||| |||||||||| ||||||| || ||||| |||||||| |||||||| ||||||||| ||||| || ||||| |
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| T |
17805401 |
agataaatcctatctatgtacatggctgtttctggttcccttagtagtttacaccttgtggcaggttctatactacctcattgtcaatgtcttacgccga |
17805302 |
T |
|
| Q |
156 |
caacggcttttaagagatcctgaaatcatgacttc |
190 |
Q |
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|||||| ||||||||||||| ||| |||||||||| |
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| T |
17805301 |
caacggtttttaagagatcccgaagtcatgacttc |
17805267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 775479 - 775356
Alignment:
| Q |
81 |
atgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccgacaacggcttttaagagatcctgaaa |
180 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
775479 |
atgtttctggtacccttagcagcttacattatgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag |
775380 |
T |
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| Q |
181 |
tcatgactt-ctacaggtaatcaa |
203 |
Q |
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||||||||| ||| |||||||||| |
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| T |
775379 |
tcatgacttcctataggtaatcaa |
775356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 52142584 - 52142729
Alignment:
| Q |
56 |
agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga |
155 |
Q |
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||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||| || ||||| |
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| T |
52142584 |
agataaatcctatctttggacatggctgtttctggttcccttagtagcttacattctgtggcaggttctatacttcctcattgtcaatgtcttacgccga |
52142683 |
T |
|
| Q |
156 |
caacggcttttaagagatcctgaaatcatgac-ttctacaggtaat |
200 |
Q |
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||| |||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
52142684 |
caaaggcttttaagagatcctgaagtcatgacatcctacaggtaat |
52142729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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