View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_15 (Length: 250)
Name: NF10721_low_15
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 8650114 - 8650012
Alignment:
| Q |
113 |
aaagatccagtctgagaggaaacaaaacgaaaatcaaagagaatctgacgattatgaaagattctgtcatgttctcatgctcaatctcacatgaaaaccc |
212 |
Q |
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| T |
8650114 |
aaagatccagtatgagaggaatcaaaacgaaaatcaaagagaatatgacgattacgaaagattttgtcatgttctcatgctcaatctcacatgaaaaccc |
8650015 |
T |
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| Q |
213 |
tag |
215 |
Q |
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||| |
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| T |
8650014 |
tag |
8650012 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8650226 - 8650165
Alignment:
| Q |
1 |
atggaagagaaaacatagataaaattaaatgaaagcatnnnnnnntggaaattgaagctcga |
62 |
Q |
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||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||| |
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| T |
8650226 |
atggaagagaaaacataaataaaatgaaatgaaagtatgaaaaaatggaaattgaagctcga |
8650165 |
T |
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