View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_2 (Length: 417)
Name: NF10721_low_2
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 2950565 - 2950192
Alignment:
| Q |
14 |
agaaagaaaataggagtagcggttacataggtgaaaaaggta----tattatcacatttaaatgtctgttaatttctttttgtacttctgccttatgaat |
109 |
Q |
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| T |
2950565 |
agaaagaaaataggagtagcggttacataggtgaaaaaggtacgtatattatcacatttaaatgtctgttaatttctttttgtacttctgccttatgaat |
2950466 |
T |
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| Q |
110 |
gaaagacctgtgttaatgtggttgcttaattcattgaatgatagttatatgatattgaatgatatatttctttttaccaatattcaatgatgttttagta |
209 |
Q |
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| T |
2950465 |
gaaagacctgtgttaatgtggttgcttaattcatt---------------------gaatgatatatttctttttaccaatattcaatgatgttttagta |
2950387 |
T |
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| Q |
210 |
cctgggtaattttttaagtataaacatgtaacttgcttgaatgaattcaatgtcaataccattaattcatttgcataaatagagtatttcttgtgcaaaa |
309 |
Q |
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| T |
2950386 |
cctgggtaattttttaagtataaacatgtaacttgcttgaatcaattcaatgtcaataccattaattcatttgcataaatagagtatttcttgtgcaaaa |
2950287 |
T |
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| Q |
310 |
tatctttctaatatttaaaaatgctattttttatagacagttttgtagcttttgaaaggtcttattaataaagtataatgattaatatcattcat |
404 |
Q |
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| T |
2950286 |
tatctttctaaaatttaaaaatgctattttttatagacagttttgtagcttttgaaaggtcttattaataaagtataatgattaatatcattcat |
2950192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 2933945 - 2933878
Alignment:
| Q |
22 |
aataggagtagcggttacataggtgaaaaaggtatattatcacatttaaatgtctgttaatttctttt |
89 |
Q |
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| T |
2933945 |
aataggagcagcggttacataggcgaaaaaggtatattgtcacctttaaatgtctcttaatttatttt |
2933878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 2933665 - 2933616
Alignment:
| Q |
292 |
agtatttcttgtgcaaaatatctttctaatatttaaaaatgctatttttt |
341 |
Q |
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| T |
2933665 |
agtatttcttgtgaaaaatatatttctgaaatttaaacatgctatttttt |
2933616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 4913139 - 4913194
Alignment:
| Q |
26 |
ggagtagcggttacataggtgaaaaagg-tatattatcacatttaaatgtctgtta |
80 |
Q |
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| T |
4913139 |
ggagtagcggttacataggcgaaaaaggttatattttcacatttaaatgcctgtta |
4913194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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