View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_25 (Length: 231)
Name: NF10721_low_25
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 48399193 - 48399034
Alignment:
| Q |
53 |
gcatcaaggtggtgaagtgagcatgatggagaagaaaacagaagtggtggtggcgatttcaaatgtgggtggagatacccatcaccatggccaagatcat |
152 |
Q |
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| T |
48399193 |
gcatcaaggtggtgaagtgagcatgatggagaagaaaacagaagtggtggtggcgatttcaaatgtgggtggagatacccatcaccatggccaagatcat |
48399094 |
T |
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| Q |
153 |
gatcatgagttgaaaggagttgaatcttcacctcgctattctacaaagtcaccaccttta |
212 |
Q |
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| T |
48399093 |
gatcatgagttgaaaggagttgaatcttcacctcgctattctacaaagtcaccaccttta |
48399034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 48382943 - 48383092
Alignment:
| Q |
60 |
ggtggtgaagtgagcatgatggagaagaaaacagaagtggtggtggcgatttcaaatgtgggtggagatacccatcaccatggccaagatcatgatcatg |
159 |
Q |
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| T |
48382943 |
ggtggtgaagtaagcatgatggagaatagaagagaagtggtagttcctatttcaaatgtgagtcgaga---ccatggccaagatcatgatcatgatcatg |
48383039 |
T |
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| Q |
160 |
agttgaaaggagttgaatcttcacctcgctattctacaaagtcaccaccttta |
212 |
Q |
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| T |
48383040 |
agttgaaagtttttgaatcttcacctcgctactctacaaagtcaccaccttta |
48383092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 48363389 - 48363459
Alignment:
| Q |
53 |
gcatcaaggtggtgaagtgagcatgatggagaagaaaacagaagtggtggtggcgatttcaaatgtgggtg |
123 |
Q |
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| T |
48363389 |
gcatcaaggtggtgaagtaaacatgatggagaagaaaagagaagtggtggtggcaatttcaaatgtgggtg |
48363459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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