View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10721_low_5 (Length: 379)
Name: NF10721_low_5
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_5 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 37842973 - 37843318
Alignment:
| Q |
15 |
cagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37842973 |
cagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttga |
37843072 |
T |
|
| Q |
115 |
attcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843073 |
attcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactac |
37843172 |
T |
|
| Q |
215 |
tggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843173 |
tggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgt |
37843272 |
T |
|
| Q |
315 |
ggagtgaccggcttaagattgttgttggaattgctgaaggactagc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843273 |
ggagtgaccggcttaagattgttgttggaattgctgaaggactagc |
37843318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 37844840 - 37845185
Alignment:
| Q |
15 |
cagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttga |
114 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| || ||||||||| ||| ||||||||||| | | ||||||||||| | || |||| ||||||||||||| |
|
|
| T |
37844840 |
cagagaacctaaatgatcactatattattggcaggggagcacattgtagtgtgtacaaagttatacttggtcaacaagcttttgctttaaagaagtttga |
37844939 |
T |
|
| Q |
115 |
attcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactac |
214 |
Q |
| |
|
||| ||| |||| || || ||| || | |||| ||||||||||||||| |||| ||||| |||||||| ||| |||| |||||||| ||||| |
|
|
| T |
37844940 |
atttggaaggaacaataaaatgcaactaagtgtcatgttcaatgaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaatacgcacactac |
37845039 |
T |
|
| Q |
215 |
tggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgt |
314 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
37845040 |
tggattggaggggattatggtttagtcttatataaattcatggaaaatggaagccttcatgatattttgcatgagaagaaacccccaccaccctttatat |
37845139 |
T |
|
| Q |
315 |
ggagtgaccggcttaagattgttgttggaattgctgaaggactagc |
360 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
37845140 |
ggagtgaccggcttaagattgctgttggaattgctcaaggattagc |
37845185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 37850690 - 37850978
Alignment:
| Q |
17 |
gagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaat |
116 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | || || || |||| ||||||||||||| |||||| |
|
|
| T |
37850690 |
gagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtgaaactgtttgtgctgtaaagaaggttgaat |
37850789 |
T |
|
| Q |
117 |
tcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactactg |
216 |
Q |
| |
|
||| | | |||| | |||||||||| |||| | | |||| ||| ||||||| || || |||| |||||||||||| | ||||||| |||||||| |
|
|
| T |
37850790 |
tcagacggaacaagcaaaagcggctaagtatcacgcgcaacgaagttgaagtcctagggatgtttaagcatcgaaatttaatcaaatgtttggactactg |
37850889 |
T |
|
| Q |
217 |
gattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccac |
305 |
Q |
| |
|
||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
37850890 |
gattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttcatgatatcttgcatgaaaagaaacctccaccac |
37850978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 50 - 305
Target Start/End: Original strand, 37831892 - 37832147
Alignment:
| Q |
50 |
ggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatga |
149 |
Q |
| |
|
|||| |||||||| |||||||||||| | ||||||| || |||| ||||||||||||| | ||||| | |||| | |||||||||| |||| | |
|
|
| T |
37831892 |
ggaggacatggtactgtgtacaaagccataattggtcagcatgtttttgctgtaaagaaggtcgaatttgggtggaacaagaaaaagcggctaagtatca |
37831991 |
T |
|
| Q |
150 |
tgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatga |
249 |
Q |
| |
|
| |||| ||||||||||| ||||| |||| |||||||||||| |||||||| |||| ||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
37831992 |
tacgcaacgaaattgaagtccttgggatgtttaagcatcgaaatttgatcaaacacgcagactactggattggagaggaatatggtttagtcttatatga |
37832091 |
T |
|
| Q |
250 |
attcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccac |
305 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
37832092 |
attcatggaaaatggaagccttcatgatattttgcatgaaaagaaacccccaccac |
37832147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 37837348 - 37837694
Alignment:
| Q |
15 |
cagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttga |
114 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | || | | |||| || |||||||||||||||||| |
|
|
| T |
37837348 |
cagagaacctaaatgatcagtatattattggaagaggagcacatggtattgtgtacaaagccataattaatgagcaggcttgtgctgtaaagaagtttga |
37837447 |
T |
|
| Q |
115 |
attcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatcaaatacgctgactac |
214 |
Q |
| |
|
||| | |||||| |||| ||| | |||| ||| ||| ||||||||||| ||| | || ||||| ||| ||||||||| | || |
|
|
| T |
37837448 |
atttggattgaacaggcaaaagtggcgaagtatcatggacaacgaaattgaagtccttaggggccttaggcatcaaaatttgatcaaatgttggagccac |
37837547 |
T |
|
| Q |
215 |
tggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgt |
314 |
Q |
| |
|
||||||||||| |||||||||||| || | ||| ||||||| |||||||||||||| |||| ||||||||||| | |||||| ||||||| ||| | || |
|
|
| T |
37837548 |
tggattggaaatgactatggtttaatcatatataaattcattgaaaatggaagcctttatgaaattttgcatgaaatgaaacccccaccacccttaaggt |
37837647 |
T |
|
| Q |
315 |
ggagtgaccggcttaagattgttgttggaattgctgaaggactagct |
361 |
Q |
| |
|
|||||| ||| |||| || | ||||||||||||| ||||||||||| |
|
|
| T |
37837648 |
ggagtgttcggtttaatatagctgttggaattgctcaaggactagct |
37837694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 28089836 - 28089938
Alignment:
| Q |
15 |
cagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttga |
114 |
Q |
| |
|
|||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| |
|
|
| T |
28089836 |
cagagaacctaaatgattggtatattgttggcagaggagcacatggtattgtgtacaaagccatgattggtcaacaggtttgtgctgtaaagaaagttga |
28089935 |
T |
|
| Q |
115 |
att |
117 |
Q |
| |
|
||| |
|
|
| T |
28089936 |
att |
28089938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 29250717 - 29250525
Alignment:
| Q |
90 |
aggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcg |
189 |
Q |
| |
|
|||||| |||| ||||||||||||| | |||||| | | || |||||||||| || ||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
29250717 |
aggtttttgctataaagaagtttgattccacaaggatcgggcagaagcggctacttaagatgtgcaaagaaattgaagcacttggaatgtgtaagcaatt |
29250618 |
T |
|
| Q |
190 |
aaacgtgatcaaatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatatttt |
282 |
Q |
| |
|
|||| |||||||||| || |||| ||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29250617 |
aaacatgatcaaataagcatactaatggattggataggaatatggtttagtcttgtttgaattcatagaaaatggaagccttcatgatatttt |
29250525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 8680212 - 8680140
Alignment:
| Q |
225 |
aggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaaacc |
297 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8680212 |
aggaatatggtttactcttatatgaattcatggaaaatggaagccttcatgatattttgcatgaaaagaaacc |
8680140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 12629949 - 12629837
Alignment:
| Q |
58 |
tggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaat |
157 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||||| |||||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||| |
|
|
| T |
12629949 |
tggtattgtttacaaagttttacttggtcaacaggtttttgctgtgaggaactttgatttcacaaggaacaggcagaagctgctatttatgatgtgcaag |
12629850 |
T |
|
| Q |
158 |
gaaattgaagtgc |
170 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
12629849 |
gaaattgatgtgc |
12629837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 52048 - 52160
Alignment:
| Q |
58 |
tggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaat |
157 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| |||||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||| |
|
|
| T |
52048 |
tggtattgtgtacaaagttttacttggtcaacaggtttttgctgtgaggaactttgatttcacaaggaacaggcagaagctgctatttatgatgtgcaag |
52147 |
T |
|
| Q |
158 |
gaaattgaagtgc |
170 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
52148 |
gaaattgatgtgc |
52160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 52183 - 52264
Alignment:
| Q |
210 |
actactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaa |
294 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||| ||| |||||||| ||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
52183 |
actactggattggagagaactgtggtttagtcttttattaattcatggaaa---gaagccttcatgatattttacatgaaaagaa |
52264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 31634317 - 31634205
Alignment:
| Q |
58 |
tggtattgtgtacaaagctttgcttggtcaacaggtttatgctgtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaat |
157 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| |||||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||| |
|
|
| T |
31634317 |
tggtattgtgtacaaagttttacttggtcaataggtttttgctgtgaggaactttgatttcacaaggaacaggcagaagctgctatttatgatgtgcaag |
31634218 |
T |
|
| Q |
158 |
gaaattgaagtgc |
170 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
31634217 |
gaaattgatgtgc |
31634205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 31634179 - 31634106
Alignment:
| Q |
218 |
attggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttcatgatattttgcatgagaagaa |
294 |
Q |
| |
|
|||||| |||| | |||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
31634179 |
attggagaggattgtggtttagtcttgtattaattcatggaaa---gaagccttcatgatattttacatgaaaagaa |
31634106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 36866274 - 36866375
Alignment:
| Q |
260 |
aatggaagccttcatgatattttgcatgagaagaaacctccaccactctttacgtggagtgaccggcttaagattgttgttggaattgctgaaggactag |
359 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| ||||||| ||| ||||||| || ||| |||| | | ||||||||||||| ||||||||| |
|
|
| T |
36866274 |
aatggaagcctttacaatattttgcatgaaaagaaacccccaccacccttaacgtggaatgttcggtttaatttagctgttggaattgctcaaggactag |
36866373 |
T |
|
| Q |
360 |
ct |
361 |
Q |
| |
|
|| |
|
|
| T |
36866374 |
ct |
36866375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 45561910 - 45561951
Alignment:
| Q |
19 |
gaacctaagtgatcaatatattattggaagaggagcacatgg |
60 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
45561910 |
gaacctaagtgatcggtatattattggaagaggagcccatgg |
45561951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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