View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10721_low_7 (Length: 343)

Name: NF10721_low_7
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10721_low_7
NF10721_low_7
[»] chr7 (21 HSPs)
chr7 (1-328)||(1782986-1783313)
chr7 (138-327)||(10646709-10646898)
chr7 (132-328)||(32957577-32957771)
chr7 (132-313)||(27707249-27707428)
chr7 (206-328)||(17891356-17891477)
chr7 (195-314)||(26822316-26822435)
chr7 (137-319)||(5265246-5265424)
chr7 (237-317)||(12733585-12733665)
chr7 (208-268)||(1777074-1777134)
chr7 (132-255)||(8105705-8105827)
chr7 (208-328)||(19142239-19142357)
chr7 (208-328)||(20741638-20741756)
chr7 (1-65)||(22975558-22975622)
chr7 (194-246)||(39227733-39227785)
chr7 (4-65)||(1775389-1775450)
chr7 (137-190)||(15053278-15053331)
chr7 (237-317)||(15757781-15757861)
chr7 (200-264)||(17880290-17880353)
chr7 (19-66)||(5265512-5265559)
chr7 (24-63)||(24865653-24865692)
chr7 (224-325)||(4450947-4451048)
[»] chr4 (20 HSPs)
chr4 (4-329)||(11545190-11545515)
chr4 (113-328)||(21809890-21810104)
chr4 (132-313)||(11419707-11419887)
chr4 (215-329)||(11449400-11449514)
chr4 (198-306)||(4746242-4746350)
chr4 (209-328)||(16404874-16404993)
chr4 (161-320)||(17474061-17474218)
chr4 (194-328)||(19053194-19053326)
chr4 (1-120)||(47575828-47575947)
chr4 (191-304)||(23866015-23866129)
chr4 (137-238)||(14475332-14475431)
chr4 (1-122)||(19053404-19053524)
chr4 (247-317)||(15365871-15365941)
chr4 (197-266)||(17743600-17743669)
chr4 (4-72)||(11449239-11449307)
chr4 (289-329)||(47575677-47575717)
chr4 (2-68)||(11419969-11420035)
chr4 (3-47)||(8911944-8911988)
chr4 (272-328)||(14475279-14475335)
chr4 (118-210)||(47575722-47575813)
[»] chr3 (20 HSPs)
chr3 (1-313)||(13291485-13291796)
chr3 (1-320)||(4514667-4514985)
chr3 (153-329)||(14427171-14427346)
chr3 (198-328)||(10928939-10929069)
chr3 (200-301)||(17119027-17119128)
chr3 (140-315)||(19905724-19905898)
chr3 (139-253)||(17637429-17637543)
chr3 (195-316)||(4767725-4767846)
chr3 (4-101)||(38076155-38076252)
chr3 (200-266)||(10686601-10686667)
chr3 (27-107)||(19905948-19906028)
chr3 (1-80)||(14332514-14332593)
chr3 (2-68)||(17119270-17119336)
chr3 (161-309)||(23955156-23955303)
chr3 (208-268)||(27485958-27486018)
chr3 (200-303)||(42250724-42250828)
chr3 (191-258)||(4508179-4508246)
chr3 (16-65)||(4767498-4767547)
chr3 (199-328)||(19306927-19307056)
chr3 (201-245)||(27592910-27592954)
[»] chr2 (34 HSPs)
chr2 (58-316)||(16917261-16917518)
chr2 (193-328)||(35666053-35666188)
chr2 (137-328)||(19877991-19878181)
chr2 (137-327)||(42256264-42256453)
chr2 (161-314)||(16587052-16587204)
chr2 (153-269)||(28449421-28449537)
chr2 (207-328)||(27765606-27765727)
chr2 (200-266)||(25564001-25564067)
chr2 (4-65)||(22311350-22311411)
chr2 (215-329)||(21748523-21748637)
chr2 (1-65)||(21748259-21748323)
chr2 (202-266)||(26704596-26704660)
chr2 (156-250)||(20588768-20588861)
chr2 (207-261)||(42297617-42297671)
chr2 (3-47)||(8685945-8685989)
chr2 (16-72)||(35665953-35666009)
chr2 (255-315)||(45572297-45572357)
chr2 (255-315)||(45575964-45576024)
chr2 (255-315)||(45579631-45579691)
chr2 (255-315)||(45583298-45583358)
chr2 (255-315)||(45586965-45587025)
chr2 (255-315)||(45590632-45590692)
chr2 (255-315)||(45594299-45594359)
chr2 (255-315)||(45597966-45598026)
chr2 (255-315)||(45601633-45601693)
chr2 (255-315)||(45605300-45605360)
chr2 (255-315)||(45608967-45609027)
chr2 (255-315)||(45612634-45612694)
chr2 (255-315)||(45616301-45616361)
chr2 (2-65)||(27765444-27765507)
chr2 (16-81)||(13073882-13073947)
chr2 (1-46)||(25916343-25916388)
chr2 (1-65)||(24764267-24764331)
chr2 (4-72)||(28449289-28449357)
[»] chr1 (19 HSPs)
chr1 (153-328)||(30805788-30805963)
chr1 (1-279)||(33438960-33439236)
chr1 (137-328)||(26898037-26898228)
chr1 (24-278)||(17316216-17316469)
chr1 (223-329)||(19003147-19003253)
chr1 (240-328)||(18932728-18932816)
chr1 (172-279)||(22666294-22666402)
chr1 (205-313)||(17103326-17103434)
chr1 (163-320)||(19960225-19960380)
chr1 (208-279)||(12669098-12669169)
chr1 (1-65)||(12668839-12668903)
chr1 (208-328)||(17496646-17496766)
chr1 (191-253)||(21721122-21721184)
chr1 (6-68)||(30805658-30805720)
chr1 (208-268)||(15787772-15787832)
chr1 (208-266)||(11833338-11833396)
chr1 (207-252)||(12893276-12893321)
chr1 (54-118)||(17103191-17103255)
chr1 (208-252)||(20619775-20619819)
[»] chr8 (14 HSPs)
chr8 (93-328)||(28890273-28890507)
chr8 (153-319)||(24277135-24277301)
chr8 (174-320)||(23520944-23521089)
chr8 (161-314)||(23584870-23585022)
chr8 (141-279)||(25724599-25724738)
chr8 (248-320)||(25727535-25727607)
chr8 (137-320)||(26576601-26576783)
chr8 (137-329)||(24502565-24502757)
chr8 (2-68)||(24308679-24308745)
chr8 (24-84)||(25724468-25724528)
chr8 (193-252)||(34062321-34062380)
chr8 (191-253)||(17872346-17872408)
chr8 (16-122)||(25727340-25727445)
chr8 (216-257)||(6589405-6589446)
[»] chr5 (15 HSPs)
chr5 (153-308)||(26013724-26013878)
chr5 (57-328)||(26335413-26335683)
chr5 (132-314)||(22826137-22826315)
chr5 (154-314)||(27499799-27499958)
chr5 (221-312)||(37336630-37336721)
chr5 (116-279)||(24838274-24838436)
chr5 (194-252)||(11848646-11848704)
chr5 (191-304)||(19903544-19903658)
chr5 (215-277)||(30608262-30608324)
chr5 (191-316)||(37390243-37390369)
chr5 (241-328)||(12859843-12859930)
chr5 (199-266)||(22186064-22186131)
chr5 (1-68)||(30608020-30608087)
chr5 (16-65)||(24492228-24492277)
chr5 (3-43)||(9824553-9824593)
[»] chr6 (12 HSPs)
chr6 (161-328)||(10814741-10814907)
chr6 (193-328)||(4097753-4097888)
chr6 (132-316)||(4312370-4312553)
chr6 (197-329)||(11703962-11704094)
chr6 (139-313)||(22562679-22562852)
chr6 (137-328)||(24575787-24575978)
chr6 (215-328)||(10821109-10821222)
chr6 (2-64)||(4312638-4312700)
chr6 (192-258)||(19691909-19691975)
chr6 (237-317)||(1558514-1558594)
chr6 (180-328)||(21747041-21747184)
chr6 (24-69)||(21747306-21747351)
[»] scaffold0650 (1 HSPs)
scaffold0650 (197-314)||(5886-6003)
[»] scaffold0514 (1 HSPs)
scaffold0514 (198-258)||(7282-7342)
[»] scaffold1190 (1 HSPs)
scaffold1190 (198-258)||(1308-1368)
[»] scaffold0088 (1 HSPs)
scaffold0088 (224-279)||(42181-42236)
[»] scaffold1551 (1 HSPs)
scaffold1551 (247-317)||(643-713)
[»] scaffold0329 (1 HSPs)
scaffold0329 (191-320)||(4310-4438)
[»] scaffold0711 (1 HSPs)
scaffold0711 (208-278)||(1622-1693)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 1783313 - 1782986
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  1783313 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgaaaatctgcatcagac 1783214  T
Q  101 ttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgat 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1783213 ttggaagaccatcagactctgaggaatatagaatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgat 1783114  T
Q  201 agtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1783113 agtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttca 1783014  T
Q  301 aatgtctaatcaacgacattgtccatat 328  Q
    ||||||||||||||||||||||||||||    
T  1783013 aatgtctaatcaacgacattgtccatat 1782986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 327
Target Start/End: Original strand, 10646709 - 10646898
Alignment:
Q  138 gagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaata 237  Q
    |||||||||||||||||||||| | ||||||| || ||||| |||||| | |||||||||||||||| | |||||| |||||| |  |  |||| ||| |    
T  10646709 gagggacccagaagacacgtcagagttgtccttttttgtagctgtctctaccaagactctgatagtatagtttgtcatcttctaagtaactgtagaaaca 10646808  T
Q  238 aacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccata 327  Q
    |||||||||||||||| |||||||||||||||  |||||||| |||  || |||||||||||||||||||||||||||||||| ||||||    
T  10646809 aacaaagaacttcaaggacaaagagaatgaacaaataattccagttacagaaaaggaatttcaaatgtctaatcaacgacattatccata 10646898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 328
Target Start/End: Complemental strand, 32957771 - 32957577
Alignment:
Q  132 gatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta 231  Q
    |||| |||||||| ||||   ||||||| ||||||||| |||| ||| |||||| ||||| | ||||||| ||||||||||| | |||||||||| ||||    
T  32957771 gatcttgagggactcagacttcacgtcagatttgtccttttctatagttgtctctatcaaaa-tctgataatacaatttgtctt-ttctgaccacatgta 32957674  T
Q  232 aaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
     ||| ||||||||||||||||| ||||||| ||||||| ||||||||| |||  || ||||||||||| |||||||||||||||||||| |||||||    
T  32957673 gaaacaaacaaagaacttcaaggacaaagataatgaacagataattccagtttcagcaaaggaatttcgaatgtctaatcaacgacattatccatat 32957577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 27707249 - 27707428
Alignment:
Q  132 gatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta 231  Q
    |||| |||||||||||||   || |||| |||||||||||| ||||| |||||| ||||| | ||| |||||||||||||||||||||||||||| ||||    
T  27707249 gatcttgagggacccagacttcatgtcaaatttgtcctcttttgtagttgtctctatcaa-agtctaatagtacaatttgtcctcttctgaccacatgta 27707347  T
Q  232 aaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaa 313  Q
     ||| ||||||||||||||||  ||||| ||||| ||| ||||||| | ||| |||  ||||||||||||||||||||||||    
T  27707348 gaaacaaacaaagaacttcaaagacaaaaagaataaactgataatttcagttttag-caaggaatttcaaatgtctaatcaa 27707428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 17891356 - 17891477
Alignment:
Q  206 aatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgt 305  Q
    |||||||||| |  |||||||||||| ||| |||||||||| |||||| ||||||| |||||| |||||||||| |||  || |||||||||||||||||    
T  17891356 aatttgtcctttgttgaccacgtgtagaaacaaacaaagaatttcaaggacaaagataatgaatggataattccagtt-cagcaaaggaatttcaaatgt 17891454  T
Q  306 ctaatcaacgacattgtccatat 328  Q
    ||||||||| ||||| |||||||    
T  17891455 ctaatcaacaacattatccatat 17891477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 26822435 - 26822316
Alignment:
Q  195 tctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaagga 294  Q
    |||||||||||||||| || |||||| || | ||||| ||| ||||||||||||||||| |||||||||| ||| |||||||||| | | | ||||||||    
T  26822435 tctgatagtacaatttatcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaaagagaacgaatggataattcctgattttgtaaagga 26822336  T
Q  295 atttcaaatgtctaatcaac 314  Q
    |||||||||| |||| ||||    
T  26822335 atttcaaatggctaaccaac 26822316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 319
Target Start/End: Complemental strand, 5265424 - 5265246
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaat 236  Q
    ||||||||||||||| ||||||| ||||||| |||||||||| |||||| ||||| |||||||||||||| ||| || |||||| || ||||||  |||     
T  5265424 tgagggacccagaagccacgtcagatttgtcttcttctgtagttgtctctatcaa-actctgatagtacagtttttcatcttctaactacgtgtggaaac 5265326  T
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacat 319  Q
    | |||||||||  | || ||||||||||||| |  |||||| |  ||| |  ||||||||||||||||| |||| ||||||||    
T  5265325 agacaaagaac--ctag-acaaagagaatgaccaaataatttcaattgcatcaaaggaatttcaaatgtttaattaacgacat 5265246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 12733665 - 12733585
Alignment:
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgac 317  Q
    ||||||||||||||||| ||||| |||||||||| ||||| || |||| |||||| ||||||||||||||  |||||||||    
T  12733665 aaacaaagaacttcaaggacaaaaagaatgaacgaataatcccagttgcagtaaatgaatttcaaatgtcccatcaacgac 12733585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 1777074 - 1777134
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaa 268  Q
    |||||| ||||||||||||||||||| | | ||||||||||||||| ||||||||||||||    
T  1777074 tttgtcttcttctgaccacgtgtaaacacagacaaagaacttcaaggacaaagagaatgaa 1777134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 8105827 - 8105705
Alignment:
Q  132 gatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta 231  Q
    |||| |||||||||||||   ||| ||| ||| ||| |||| ||||| |||||| ||||| | |||||||||||| |||||||| || | ||||||||||    
T  8105827 gatcttgagggacccagacaccacatcagattagtcttcttttgtagttgtctctatcaa-agtctgatagtacagtttgtccttttttaaccacgtgta 8105729  T
Q  232 aaaataaacaaagaacttcaagaa 255  Q
     ||| ||||||||||||| |||||    
T  8105728 gaaacaaacaaagaacttaaagaa 8105705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 19142357 - 19142239
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtct 307  Q
    ||||||||||||| ||||||| || ||| |||||| |||||||||| ||  |||||||||| |||||| ||| |||     ||||||||||  |||||||    
T  19142357 tttgtcctcttctaaccacgtatagaaacaaacaaggaacttcaaggac--agagaatgaatggataactccagtttctccaaaggaattttgaatgtct 19142260  T
Q  308 aatcaacgacattgtccatat 328  Q
    |||||||| |||| |||||||    
T  19142259 aatcaacggcattatccatat 19142239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 20741756 - 20741638
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtct 307  Q
    ||||||||||||| ||||||| || ||| |||||| |||||||||| ||  |||||||||| |||||| ||| |||     ||||||||||  |||||||    
T  20741756 tttgtcctcttctaaccacgtatagaaacaaacaaggaacttcaaggac--agagaatgaatggataactccagtttctccaaaggaattttgaatgtct 20741659  T
Q  308 aatcaacgacattgtccatat 328  Q
    |||||||| |||| |||||||    
T  20741658 aatcaacggcattatccatat 20741638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22975622 - 22975558
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    ||||||||||||| |||||||| |||||||||||| ||||||| || || |||||||| ||||||    
T  22975622 aaaagactatggtaaaagatctgaagaaaggtcaaccagaagtgaacatattggatcaaaagaaa 22975558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 39227733 - 39227785
Alignment:
Q  194 ctctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaa 246  Q
    |||||||||||||||||||  ||||||||||||||| | ||||||||||||||    
T  39227733 ctctgatagtacaatttgttttcttctgaccacgtgcagaaataaacaaagaa 39227785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 1775389 - 1775450
Alignment:
Q  4 agactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    ||||||||||  || |||| ||||||| |||| ||||||| |||||||||||||||||||||    
T  1775389 agactatggtagaaaatctgaagaaagatcaaccagaagttaatatgttggatcagaagaaa 1775450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 15053331 - 15053278
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatca 190  Q
    ||||| ||||||||| ||||||| ||||||| |||||||||| |||||||||||    
T  15053331 tgaggaacccagaagccacgtcagatttgtcttcttctgtagttgtctcaatca 15053278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 15757781 - 15757861
Alignment:
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgac 317  Q
    |||||||||| || ||| || || ||||||||| || |||||| |||| |||||| ||| ||||||||||| |||||||||    
T  15757781 aaacaaagaaatttaaggactaaaagaatgaacagacaattccagttgcagtaaatgaacttcaaatgtctcatcaacgac 15757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 17880353 - 17880290
Alignment:
Q  200 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaa 264  Q
    |||||||||||||| |||||| |||| ||||| ||| |||||||||| |||||| ||||||||||    
T  17880353 tagtacaatttgtcttcttctaaccatgtgtagaaa-aaacaaagaaattcaagtacaaagagaa 17880290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 5265559 - 5265512
Alignment:
Q  19 atctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaag 66  Q
    |||| |||||||||||||||||||||||||  |||||| |||||||||    
T  5265559 atctgaagaaaggtcaatcagaagtcaatacattggattagaagaaag 5265512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 24865692 - 24865653
Alignment:
Q  24 aagaaaggtcaatcagaagtcaatatgttggatcagaaga 63  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  24865692 aagaaaggtcaatcagaagtcaatactttggatcagaaga 24865653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 4451048 - 4450947
Alignment:
Q  224 cacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtc 323  Q
    |||||||| | | |||||||||||||||| |||| |  ||| ||||||||||||||  ||   | |||||||||||||||||||  ||||||| ||| ||    
T  4451048 cacgtgtagatacaaacaaagaacttcaacaacagatggaacgaacggataattcctctttctgcaaaggaatttcaaatgtcttttcaacgatattatc 4450949  T
Q  324 ca 325  Q
    ||    
T  4450948 ca 4450947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 329
Target Start/End: Complemental strand, 11545515 - 11545190
Alignment:
Q  4 agactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttg 103  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||| |  |||||||||||||||| |||||  ||||||  || | || | |||||||||      
T  11545515 agactatggtagaagatctcaagaaaggttaatcagaagtcaacaccttggatcagaagaaagaaagtcaatcagaacctgaagatctacatcagactct 11545416  T
Q  104 gaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagt 203  Q
     |||||||||||||||||| ||||| | || |  |||||||||||||  ||| ||| |||| ||||||| ||| | |||||| ||||||||||||||| |    
T  11545415 aaagaccatcagactctgaagaatagaagacccagagggacccagaattcacatcagatttatcctcttatgttgttgtctctatcaagactctgataat 11545316  T
Q  204 acaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaat 303  Q
    |||||||||| ||||||||||| ||||| ||| ||||||| ||||||||| ||||||||||| ||||||||||||| |||  |  |||||||||||||||    
T  11545315 acaatttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagagaataaacggataattccagtttcaacaaaggaatttcaaat 11545216  T
Q  304 gtctaatcaacgacattgtccatatt 329  Q
     | ||||||| |||||| ||||||||    
T  11545215 ttttaatcaatgacattatccatatt 11545190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 328
Target Start/End: Original strand, 21809890 - 21810104
Alignment:
Q  113 cagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgt 212  Q
    |||||||||| | | ||| |||| ||||||| |||||   ||||| | |||||||||||||||||| ||||| |||||| | |||||||||||||| |||    
T  21809890 cagactctgaagtacataagatcttgagggatccagacaccacgtaagatttgtcctcttctgtagttgtcttaatcaa-agtctgatagtacaatctgt 21809988  T
Q  213 cctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatca 312  Q
    | | ||  || |||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||||  |||  | |||| ||||||  ||||||||||||    
T  21809989 cttatttagatcacgtgtaaaaacaaacaaataacttcaaggacaaagagaatgaacagataattctagtttgaataaatgaattttgaatgtctaatca 21810088  T
Q  313 acgacattgtccatat 328  Q
    || ||||| |||||||    
T  21810089 acaacattatccatat 21810104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 313
Target Start/End: Complemental strand, 11419887 - 11419707
Alignment:
Q  132 gatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta 231  Q
    |||| |||||||||||||   || |||| |||||||||||||||||| ||| || ||||| | ||||||| |||| ||| || |||||||||||||||||    
T  11419887 gatcttgagggacccagactccatgtcagatttgtcctcttctgtagttgtttctatcaa-agtctgataatacagtttttcttcttctgaccacgtgta 11419789  T
Q  232 aaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaa 313  Q
     ||| ||||||||||||||||| |||||||||||||||  |||||| |  ||  | || |||||||||||||||||||||||    
T  11419788 gaaacaaacaaagaacttcaaggacaaagagaatgaacatataattacaatttcaatagaggaatttcaaatgtctaatcaa 11419707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 11449400 - 11449514
Alignment:
Q  215 tcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
    ||||||||||| ||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||  |  |||||||||||||||||||||||||     
T  11449400 tcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagaaaatgaacggataattccagtttcaacaaaggaatttcaaatgtctaatcaat 11449499  T
Q  315 gacattgtccatatt 329  Q
    |||||| ||||||||    
T  11449500 gacattatccatatt 11449514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 4746242 - 4746350
Alignment:
Q  198 gatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatt 297  Q
    |||||||||||||||  ||| |||| || ||| ||| | ||||||||||||||||| |||||  ||||||||  |||||||| |||| | |||| |||||    
T  4746242 gatagtacaatttgtattctcctgatcatgtgaaaatacaaacaaagaacttcaaggacaaaaggaatgaacaaataattccagttgcaataaaagaatt 4746341  T
Q  298 tcaaatgtc 306  Q
    |||||||||    
T  4746342 tcaaatgtc 4746350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 16404874 - 16404993
Alignment:
Q  209 ttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtcta 308  Q
    ||||| |||||| || | ||||| ||||  ||||| ||||||||  || |||||||||||  ||||||| | |||||||| || ||||||||||||| ||    
T  16404874 ttgtcatcttctcactatgtgtagaaatggacaaacaacttcaatgacgaagagaatgaatagataatttcagttgtagtcaaagaatttcaaatgtata 16404973  T
Q  309 atcaacgacattgtccatat 328  Q
    |||||| ||||| |||||||    
T  16404974 atcaactacattatccatat 16404993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 17474061 - 17474218
Alignment:
Q  161 atttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaag 260  Q
    ||||||| |||||||||| |||||| ||||| | |||||||||||| ||||||||||||| |||||| ||| ||| ||||||  || |||||| || |||    
T  17474061 atttgtcatcttctgtagttgtctctatcaa-agtctgatagtacagtttgtcctcttctaaccacg-gtagaaacaaacaagaaatttcaaggacgaag 17474158  T
Q  261 agaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacatt 320  Q
    | |||||||  |||||| | |||  |  ||||||||||  ||| ||||||||| ||||||    
T  17474159 aaaatgaacaaataatttcagtttcaacaaaggaattttgaatatctaatcaatgacatt 17474218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 19053326 - 19053194
Alignment:
Q  194 ctctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaagg 293  Q
    ||||||| ||| | ||| || ||||||||||||||| | ||| ||||||||||||||||| || ||||||||||||   ||||| |  || ||| |||||    
T  19053326 ctctgattgtatagtttatcttcttctgaccacgtgcagaaacaaacaaagaacttcaaggaccaagagaatgaacatgtaatttcaattttagcaaagg 19053227  T
Q  294 aatttcaaatgtctaatcaacgacattgtccatat 328  Q
    |||||| ||  ||||||||| |||||| |||||||    
T  19053226 aatttcgaa--tctaatcaatgacattatccatat 19053194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 47575947 - 47575828
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagac 100  Q
    ||||||| |||||  ||||||| |||||||||||| |||||| |||  | |||||||||||||||  |||   ||||||||||| | || ||||||||||    
T  47575947 aaaagaccatggtagaagatctgaagaaaggtcaaccagaagacaacgtcttggatcagaagaaacaaagctactcagaagttggagatctgcatcagac 47575848  T
Q  101 ttggaagaccatcagactct 120  Q
    |  ||||| |||||||||||    
T  47575847 tctgaagagcatcagactct 47575828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 23866129 - 23866015
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagta 289  Q
    |||||| ||||||||| ||||||||||||||| || ||| | ||| ||||||||||||||||| ||||   ||||| |||| ||||||||  ||| || |    
T  23866129 agactcagatagtacagtttgtcctcttctgatcatgtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaagca 23866030  T
Q  290 aaggaatttcaaatg 304  Q
    ||||||||| |||||    
T  23866029 aaggaattttaaatg 23866015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 14475431 - 14475332
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaat 236  Q
    |||||||||||||   || |||| |||| ||||||| ||||| |||||| ||||| | || ||||||||| |||||||||||||||||||||||| ||||    
T  14475431 tgagggacccagacaccaagtcagatttttcctcttttgtagttgtctctatcaa-agtc-gatagtacagtttgtcctcttctgaccacgtgtagaaat 14475334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 19053524 - 19053404
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagac 100  Q
    |||||||||| ||  |||||||||||||| || || || ||| |||||| |||||||| ||||||||||| | |||||||| || | || ||||||||||    
T  19053524 aaaagactattgtagaagatctaaagaaaagttaaccataag-caatatcttggatcataagaaaggaagccactcagaagctgaagatctgcatcagac 19053426  T
Q  101 ttggaagaccatcagactctga 122  Q
    |  ||||| ||||||| |||||    
T  19053425 tctgaagagcatcagaatctga 19053404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 15365871 - 15365941
Alignment:
Q  247 cttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgac 317  Q
    ||||||| ||||| |||||||||| ||||| || |||| |||||| ||||||||||||||  |||||||||    
T  15365871 cttcaaggacaaaaagaatgaacgaataatcccagttgcagtaaatgaatttcaaatgtcccatcaacgac 15365941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 17743669 - 17743600
Alignment:
Q  197 tgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg 266  Q
    ||||||||| ||||||| |||| |||||||||| | ||| |||||||||| |||||  ||||||||||||    
T  17743669 tgatagtactatttgtcttcttatgaccacgtgcagaaacaaacaaagaagttcaatgacaaagagaatg 17743600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 11449239 - 11449307
Alignment:
Q  4 agactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtc 72  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||| |  || ||||||||||||| |||||    
T  11449239 agactatggtagaagatctcaagaaaggttaatcagaagtcaacaccttagatcagaagaaagaaagtc 11449307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 47575717 - 47575677
Alignment:
Q  289 aaaggaatttcaaatgtctaatcaacgacattgtccatatt 329  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  47575717 aaaggaatttcaaatgtctaatcaacaacattatccatatt 47575677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 11420035 - 11419969
Alignment:
Q  2 aaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaagga 68  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||||   |  |||||||||||||||    
T  11420035 aaagactatggtagaagatctgaagaaaggtcaaccagaagtcaatgcctcagatcagaagaaagga 11419969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8911988 - 8911944
Alignment:
Q  3 aagactatggttaaagatctaaagaaaggtcaatcagaagtcaat 47  Q
    ||||| |||||  |||||||||||||||||||| |||||||||||    
T  8911988 aagacaatggtagaagatctaaagaaaggtcaaccagaagtcaat 8911944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 14475335 - 14475279
Alignment:
Q  272 ataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    ||||||||  || ||| ||||||||||  |||||||||||||||||||| |||||||    
T  14475335 ataattccaattttagcaaaggaattttgaatgtctaatcaacgacattatccatat 14475279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 47575813 - 47575722
Alignment:
Q  118 tctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaattt 210  Q
    ||||| ||| ||| |||| ||||||||||| ||| ||  ||| |||||| ||||||||||| |||| | || |||||||||||||| ||||||    
T  47575813 tctgaagaacataagatcttgagggacccataagccat-tcagatttgttctcttctgtagttgtccctattaagactctgatagttcaattt 47575722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 13291485 - 13291796
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagac 100  Q
    ||||||| | |||| | |||||||| ||||| |||||||||||||| || |||||||||||||||| ||||| |  |||||||| | || | |||||||     
T  13291485 aaaagaccaaggttgatgatctaaaaaaagg-caatcagaagtcaacatcttggatcagaagaaagaaagtcacgaagaagttgaagatctacatcagat 13291583  T
Q  101 ttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgat 200  Q
    |  ||||| ||||||||||||| | | | | |||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||||| || ||| | |||||    
T  13291584 tatgaagagcatcagactctgaagtacagaagatcctgagggacccaaaagccacgtcagatttatcctcttttgtagatgtctctataaaggcactgat 13291683  T
Q  201 agtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttca 300  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||| |||| ||||| ||||||||||||||||| | |||  |  |||| |||||||    
T  13291684 agtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatgaacggataatttcagtttcaacaaagaaatttca 13291783  T
Q  301 aatgtctaatcaa 313  Q
    |||||||||||||    
T  13291784 aatgtctaatcaa 13291796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 4514985 - 4514667
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagac 100  Q
    |||||||||||||  |||||||||||||| ||||| |||||||||| |  ||||||||  |||||||||  | ||||||||||  | || | ||||||||    
T  4514985 aaaagactatggtagaagatctaaagaaatgtcaaccagaagtcaacaccttggatcaatagaaaggaaaacactcagaagttaaagatctacatcagac 4514886  T
Q  101 ttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgat 200  Q
    |  ||| |||  || ||||||| ||||| | || | | ||||||| ||||  | ||||| |||||||||||| |||||  ||||  |||||||||||||     
T  4514885 tctgaaaacctccaaactctgaagaatagaagacccttagggacctagaatcctcgtcaaatttgtcctcttatgtagcagtctttatcaagactctgaa 4514786  T
Q  201 agtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtag-taaaggaatttc 299  Q
    |||||| |||||| || |||||||||||||||||  ||||||||||||||||| |||||||||| |||| ||||||||  |||| ||  |||||||||||    
T  4514785 agtacagtttgtcttcctctgaccacgtgtaaaa--aaacaaagaacttcaagtacaaagagaacgaacagataattctagttgcagcaaaaggaatttc 4514688  T
Q  300 aaatgtctaatcaacgacatt 320  Q
    |||||  ||||| ||||||||    
T  4514687 aaatgaataatccacgacatt 4514667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 153 - 329
Target Start/End: Original strand, 14427171 - 14427346
Alignment:
Q  153 cacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||||| ||||||| |||||||||| |||||| ||||| | ||||||||||||||||||| | |||| |||||||||| ||| ||||||||||||||||    
T  14427171 cacgtcagatttgtcttcttctgtagttgtctctatcaa-agtctgatagtacaatttgtctttttctaaccacgtgtataaacaaacaaagaacttcaa 14427269  T
Q  253 gaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatatt 329  Q
    | ||| ||||||||||| |||||||||   |  |  ||||||| ||  |||||||| ||||||||||| ||||||||    
T  14427270 ggacatagagaatgaacagataattccaagttcatgaaaggaaatttgaatgtctactcaacgacattatccatatt 14427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 10929069 - 10928939
Alignment:
Q  198 gatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatt 297  Q
    |||| ||||||||||||||||||||||| ||||| ||| |||||| |||||||||| | |||||||||||| |||||||||| |||  || || ||||||    
T  10929069 gataatacaatttgtcctcttctgaccatgtgtagaaacaaacaaggaacttcaaggataaagagaatgaatggataattccagtttcagcaatggaatt 10928970  T
Q  298 tcaaatgtctaatcaacgacattgtccatat 328  Q
    |  ||||||||||||| | |||| |||||||    
T  10928969 ttgaatgtctaatcaatggcattatccatat 10928939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 17119128 - 17119027
Alignment:
Q  200 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttc 299  Q
    |||||||||||||| |||||||| ||||| || ||| ||||||||||||||||| ||||||||||||||| ||||||||| |||   | |||||||||||    
T  17119128 tagtacaatttgtcttcttctgatcacgtatagaaacaaacaaagaacttcaaggacaaagagaatgaactgataattccagtttccgcaaaggaatttc 17119029  T
Q  300 aa 301  Q
    ||    
T  17119028 aa 17119027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 140 - 315
Target Start/End: Complemental strand, 19905898 - 19905724
Alignment:
Q  140 gggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaa 239  Q
    |||||||||||| ||| ||| |||||| ||||| || || |||||| ||||| ||| |||||||| | |||||| ||||||||| || | || ||| |||    
T  19905898 gggacccagaagtcacatcagatttgttctcttgtgcagctgtctctatcaa-actatgatagtatagtttgtcatcttctgacaacatatataaacaaa 19905800  T
Q  240 caaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
     ||||||||||||  |||||||||||||||  ||| |||| || | || |||| ||||||||||||| ||||||||    
T  19905799 taaagaacttcaaagacaaagagaatgaacaaatagttccagtcgcagcaaagaaatttcaaatgtcaaatcaacg 19905724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 17637429 - 17637543
Alignment:
Q  139 agggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataa 238  Q
    |||||| |||||  ||||||| |||| ||||||||||||| |||  | |||| |  | |||||||||||||| || |||||||||||| |||| ||| ||    
T  17637429 agggactcagaatccacgtcagatttttcctcttctgtagttgttcctatcatgtatgtgatagtacaatttatcttcttctgaccacatgtagaaacaa 17637528  T
Q  239 acaaagaacttcaag 253  Q
    |||||||||||||||    
T  17637529 acaaagaacttcaag 17637543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 4767725 - 4767846
Alignment:
Q  195 tctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaagga 294  Q
    |||||| ||||| |||||| |||| |  |||| || | ||| ||||||| ||||||||| ||| ||||||||||||||||||||  |||   | ||||||    
T  4767725 tctgatggtacagtttgtcttcttgttgccacttgaataaacaaacaaataacttcaaggacagagagaatgaacggataattcttgtttctgcaaagga 4767824  T
Q  295 atttcaaatgtctaatcaacga 316  Q
    | ||||||||||||||||||||    
T  4767825 aattcaaatgtctaatcaacga 4767846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 38076155 - 38076252
Alignment:
Q  4 agactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagact 101  Q
    ||||||||||  ||||| | |||||||||||| |||||||| | |  |||||||||||||||||||||| |||||||| || | || |||||||||||    
T  38076155 agactatggtagaagatttgaagaaaggtcaaccagaagtcgacaccttggatcagaagaaaggaagtcactcagaagctgaagatctgcatcagact 38076252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 10686667 - 10686601
Alignment:
Q  200 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg 266  Q
    |||||||||||||  ||||||||||||||||| ||| |||||||||| ||||||  |||||||||||    
T  10686667 tagtacaatttgtattcttctgaccacgtgtagaaacaaacaaagaaattcaagggcaaagagaatg 10686601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 19906028 - 19905948
Alignment:
Q  27 aaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttggaag 107  Q
    |||||||||||||||||||| || ||||||||||||||||| |||| | |||||| || | || ||||| |||||| ||||    
T  19906028 aaaggtcaatcagaagtcaacatcttggatcagaagaaaggtagtcacgcagaagctgaagatctgcataagactttgaag 19905948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14332593 - 14332514
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaa 80  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||    || ||| |||||||| |||||| |||||||    
T  14332593 aaaagactatggtagaagatctaaagaaaggtcaaccagaagtcaacgccttagataagaagaaatgaagtcactcagaa 14332514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 17119336 - 17119270
Alignment:
Q  2 aaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaagga 68  Q
    ||||||||||||  ||||||| ||| |||||||| |||||||||| |  ||||||||||||||||||    
T  17119336 aaagactatggtagaagatctgaaggaaggtcaaccagaagtcaacaccttggatcagaagaaagga 17119270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 309
Target Start/End: Original strand, 23955156 - 23955303
Alignment:
Q  161 atttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta-aaaataaacaaagaacttcaagaacaaa 259  Q
    |||| ||||||||||||| |||||| ||||| ||| ||||| || | |||||  |||||||||||| |||| |||| | ||||||||||||||| |||||    
T  23955156 atttttcctcttctgtagctgtctcgatcaa-actatgatattatagtttgtgatcttctgaccacatgtagaaaacagacaaagaacttcaaggacaaa 23955254  T
Q  260 gagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaa 309  Q
     |   ||||||| ||||||  |||  || |||| ||||||||||||||||    
T  23955255 -atgttgaacgggtaattctagtttcagcaaagaaatttcaaatgtctaa 23955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 27485958 - 27486018
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaa 268  Q
    |||||| ||||||||||||||||| ||| | ||||||||||||||| ||||  ||||||||    
T  27485958 tttgtcttcttctgaccacgtgtagaaacagacaaagaacttcaaggacaataagaatgaa 27486018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 42250724 - 42250828
Alignment:
Q  200 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagtaaaggaattt 298  Q
    |||||||||||||| |||||| ||| |||| ||||| ||| ||||||||||||  |||||  ||||| ||| |||||||||  ||| || |||| |||||    
T  42250724 tagtacaatttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatggaatgaaacagataattccaattgaagcaaagaaattt 42250823  T
Q  299 caaat 303  Q
    |||||    
T  42250824 caaat 42250828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 4508246 - 4508179
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaa 258  Q
    |||||| ||||||| | ||||||||||| ||| |||||| | ||||| ||||||||||||||| ||||    
T  4508246 agactcagatagtatattttgtcctcttttgatcacgtgcagaaatagacaaagaacttcaaggacaa 4508179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 4767498 - 4767547
Alignment:
Q  16 aagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    |||||||||||||||||||| |||||||||| |  || ||||||||||||    
T  4767498 aagatctaaagaaaggtcaaccagaagtcaacaccttagatcagaagaaa 4767547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 19306927 - 19307056
Alignment:
Q  199 atagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaattt 298  Q
    |||||||| ||| ||||||||||| |||||  | ||| ||||| ||||||||||| ||||| | |||||||  ||||||||  ||  || ||||||||||    
T  19306927 atagtacattttctcctcttctgatcacgtacagaaacaaacatagaacttcaaggacaaaaaaaatgaactaataattccaatttgagcaaaggaattt 19307026  T
Q  299 caaatgtctaatcaacgacattgtccatat 328  Q
      || || ||||||||  |||| |||||||    
T  19307027 tgaacgtataatcaacaccattatccatat 19307056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 27592954 - 27592910
Alignment:
Q  201 agtacaatttgtcctcttctgaccacgtgtaaaaataaacaaaga 245  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||    
T  27592954 agtataatttgtcttcttctgaccacttgtataaataaacaaaga 27592910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 316
Target Start/End: Original strand, 16917261 - 16917518
Alignment:
Q  58 agaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgt 157  Q
    ||||||||||||||| |||| |||||| | || |||||||||||  ||||||| | ||||||||| ||| ||| || | ||||||| ||||||| ||| |    
T  16917261 agaagaaaggaagtcactcataagttgaagatctgcatcagactctgaagacctt-agactctgaagaacataagagcctgagggatccagaagccacat 16917359  T
Q  158 catatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaaca 257  Q
    || |||| || |||| ||||| |||| | |||||||||||||||||||||||| || |||| |||||||||||| | | |||||| ||| |||||| |||    
T  16917360 cagatttttcttcttatgtagttgtcgctatcaagactctgatagtacaatttttcttcttttgaccacgtgtagatacaaacaaggaatttcaaggaca 16917459  T
Q  258 aagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacga 316  Q
    |||||||||| |||||| || | |||  || ||||||||||||||||||||||||||||    
T  16917460 aagagaatgatcggatactttcagtttcagcaaaggaatttcaaatgtctaatcaacga 16917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 35666053 - 35666188
Alignment:
Q  193 actctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaag 292  Q
    ||||||||||||||||||||| ||||| |||||| |||| ||||| ||||||||||||||| | ||||||||  ||||||||||||| |||| |  ||||    
T  35666053 actctgatagtacaatttgtcatcttccgaccacatgtagaaatagacaaagaacttcaaggaaaaagagaactaacggataattcctgttgcaacaaag 35666152  T
Q  293 gaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    ||||||||||||||||||||| | |||| |||||||    
T  35666153 gaatttcaaatgtctaatcaatgtcattatccatat 35666188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 328
Target Start/End: Original strand, 19877991 - 19878181
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaat 236  Q
    |||||| |||| ||| ||||||| ||||||| |||| ||||| | |||| ||||| || |||||||||| ||||||| ||||||||||| ||| | |||     
T  19877991 tgaggggcccaaaagccacgtcagatttgtcttcttttgtagttatctctatcaa-accctgatagtaccatttgtcatcttctgaccatgtggagaaac 19878089  T
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    | ||||| || |||||| ||||||| |||||| |||||||||  |||| |  ||||||||||||||| |||||||||||||||| |||||||    
T  19878090 agacaaaaaaattcaaggacaaagataatgaatggataattctagttgaaacaaaggaatttcaaatatctaatcaacgacattatccatat 19878181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 327
Target Start/End: Complemental strand, 42256453 - 42256264
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaat 236  Q
    ||||| ||||| ||| ||||| | ||||||| | ||||| || |||||  |||| ||||||||||||||| |||||| |||| | |||||||| | | |     
T  42256453 tgaggaacccataagccacgttagatttgtctttttctgaagctgtctttatca-gactctgatagtacattttgtcttcttgtaaccacgtgcagatac 42256355  T
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccata 327  Q
    ||||||||||||||||| |||||  |||||||||| ||||||   ||| |||||||||||||||||||||||||||| || ||| ||||||    
T  42256354 aaacaaagaacttcaagtacaaaaggaatgaacgggtaattctaattgcagtaaaggaatttcaaatgtctaatcaatgatattatccata 42256264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 314
Target Start/End: Original strand, 16587052 - 16587204
Alignment:
Q  161 atttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaag 260  Q
    |||||||||||| ||||| |||||| | ||| | |||||||||| | |||||| |||||||||||| |||| ||| |||||| |||||||||| ||||||    
T  16587052 atttgtcctcttatgtagttgtctctaccaa-agtctgatagtatagtttgtcttcttctgaccacatgtacaaacaaacaatgaacttcaaggacaaag 16587150  T
Q  261 agaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
    |||||||| | |||||||  |||   | ||||||||||||||||||||||||||    
T  16587151 agaatgaaagaataattctagtttatgcaaaggaatttcaaatgtctaatcaac 16587204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 28449421 - 28449537
Alignment:
Q  153 cacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||||| |||| ||||||| |||| || |||| ||||||||| |||||||||||| |||| ||||||||||||||||| |||  |||||||||||| ||    
T  28449421 cacgtcagatttttcctcttttgtatatttctctatcaagactttgatagtacaatgtgtcttcttctgaccacgtgtagaaaccaacaaagaacttaaa 28449520  T
Q  253 gaacaaagagaatgaac 269  Q
    | |||||||||||||||    
T  28449521 ggacaaagagaatgaac 28449537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 27765606 - 27765727
Alignment:
Q  207 atttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtc 306  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||| | |  |  ||||||||||  |||||     
T  27765606 atttgtcttcttctgaccacgtgtagaaacaaacaaagaacttcaaggacagagagaatgaacggataattccggcttcaacaaaggaattttgaatgta 27765705  T
Q  307 taatcaacgacattgtccatat 328  Q
    ||||||||| |||| |||||||    
T  27765706 taatcaacgtcattatccatat 27765727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 25564001 - 25564067
Alignment:
Q  200 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg 266  Q
    ||||| |||||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||    
T  25564001 tagtataatttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaaaaacaaagagaatg 25564067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 22311350 - 22311411
Alignment:
Q  4 agactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    ||||||||||  |||||||||||||||||||| |||||||||| || |||||||||||||||    
T  22311350 agactatggtagaagatctaaagaaaggtcaaccagaagtcaacatattggatcagaagaaa 22311411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 21748523 - 21748637
Alignment:
Q  215 tcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
    ||||||||||||||||| ||||  ||||| ||||||||| ||||||||||||||   || ||||| |||  || ||| |||||||||||| ||| |||||    
T  21748523 tcttctgaccacgtgtagaaattgacaaataacttcaagcacaaagagaatgaataaattattccagtttcagcaaatgaatttcaaatgactattcaac 21748622  T
Q  315 gacattgtccatatt 329  Q
    |  ||| ||||||||    
T  21748623 gggattatccatatt 21748637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21748259 - 21748323
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    |||||||||||||  ||||||| |||||||||||| || ||||||| || |||||||||||||||    
T  21748259 aaaagactatggtagaagatctgaagaaaggtcaaccacaagtcaacatcttggatcagaagaaa 21748323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 26704660 - 26704596
Alignment:
Q  202 gtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg 266  Q
    ||||||||||||  ||| |||||| ||| |||||||||||||||| |||||| ||||||||||||    
T  26704660 gtacaatttgtcgccttatgaccatgtgcaaaaataaacaaagaaattcaaggacaaagagaatg 26704596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 20588768 - 20588861
Alignment:
Q  156 gtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttc 250  Q
    ||||||||||||| ||||||||| |||||| ||||| | ||||||||| || ||| || |||||| |||| ||||| ||| |||||| |||||||    
T  20588768 gtcatatttgtccacttctgtagctgtctctatcaa-agtctgatagtccagtttatcttcttcttaccatgtgtataaacaaacaatgaacttc 20588861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 42297617 - 42297671
Alignment:
Q  207 atttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaaga 261  Q
    ||||||| ||||||||||||||||| |||| ||||||||| |||||| |||||||    
T  42297617 atttgtcttcttctgaccacgtgtagaaattaacaaagaaattcaaggacaaaga 42297671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8685989 - 8685945
Alignment:
Q  3 aagactatggttaaagatctaaagaaaggtcaatcagaagtcaat 47  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  8685989 aagactatggttaaagatctaaaggaaggtcaactagaagtcaat 8685945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 35665953 - 35666009
Alignment:
Q  16 aagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtc 72  Q
    ||||||| |||||| ||||| |||||||||| || ||||||||||||||| ||||||    
T  35665953 aagatctgaagaaaagtcaaccagaagtcaacattttggatcagaagaaatgaagtc 35666009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45572297 - 45572357
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45572297 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45572357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45575964 - 45576024
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45575964 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45576024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45579631 - 45579691
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45579631 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45579691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45583298 - 45583358
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45583298 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45583358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45586965 - 45587025
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45586965 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45587025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45590632 - 45590692
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45590632 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45590692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45594299 - 45594359
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45594299 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45594359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45597966 - 45598026
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45597966 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45598026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45601633 - 45601693
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45601633 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45601693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45605300 - 45605360
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45605300 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45605360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45608967 - 45609027
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45608967 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45609027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45612634 - 45612694
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45612634 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45612694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 45616301 - 45616361
Alignment:
Q  255 acaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacg 315  Q
    |||||||||||||||||| |||||| |||  || |||||||||||||||| ||| ||||||    
T  45616301 acaaagagaatgaacggacaattccagtttcagcaaaggaatttcaaatgactattcaacg 45616361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 27765444 - 27765507
Alignment:
Q  2 aaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    ||||||||||||  ||||||| |||||| ||||| |||||||||| || || ||||||||||||    
T  27765444 aaagactatggtagaagatctgaagaaatgtcaaccagaagtcaacatcttcgatcagaagaaa 27765507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 13073947 - 13073882
Alignment:
Q  16 aagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaag 81  Q
    ||||||| ||||||||  ||||||||||||| ||||| |||||||||| | |||||| | ||||||    
T  13073947 aagatctgaagaaagggaaatcagaagtcaacatgttagatcagaagagaagaagtcacccagaag 13073882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25916343 - 25916388
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaa 46  Q
    |||||||||||||  ||||||||| |||||||||| ||||||||||    
T  25916343 aaaagactatggtagaagatctaatgaaaggtcaaccagaagtcaa 25916388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24764267 - 24764331
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    |||||| |||||| ||| ||||||| |||| |||| |||||||||| |  |||||||||||||||    
T  24764267 aaaagaatatggtaaaatatctaaaaaaagatcaaccagaagtcaacacattggatcagaagaaa 24764331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 28449289 - 28449357
Alignment:
Q  4 agactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtc 72  Q
    ||||||||||  ||||||| ||||||||||||  |||||||||    |||||||||||||||| |||||    
T  28449289 agactatggtagaagatctgaagaaaggtcaactagaagtcaacgccttggatcagaagaaagcaagtc 28449357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 328
Target Start/End: Original strand, 30805788 - 30805963
Alignment:
Q  153 cacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||||| ||||||| |||||| ||| |||||| ||||| ||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||    
T  30805788 cacgtcagatttgtcatcttctatagttgtctctatcaatactctgatagtacaatttgtcttcttctggccacgtgtagaaacaaacaaagaacttcaa 30805887  T
Q  253 gaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    | | ||||| ||||||||||||||||  |||  |  ||||||||||| |||||||||||||||||||| |||||||    
T  30805888 ggagaaagacaatgaacggataattctagtttcatgaaaggaatttcgaatgtctaatcaacgacattatccatat 30805963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33439236 - 33438960
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagac 100  Q
    |||||||| ||||  ||||||| | ||||||| || || |||||||  | ||||||||||||||||||||   |||| ||| |  | || ||||||||||    
T  33439236 aaaagactttggtagaagatctgatgaaaggtaaaccataagtcaacgtcttggatcagaagaaaggaagcaactcataagctaaagatctgcatcagac 33439137  T
Q  101 ttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgat 200  Q
    || |||||||  ||  || ||| | | | | |||| || |||||| ||||| ||||||| |||| || | |||||||| |||||| ||||||||||||||    
T  33439136 tttgaagacctcca--ctttgaagtacagaagatcctgcgggacctagaagccacgtcaaatttatcattttctgtagttgtctctatcaagactctgat 33439039  T
Q  201 agtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcc 279  Q
    | |||||||| || ||||||||||||||||| ||  ||||||||||||||||| ||||||| ||||| |||||||||||    
T  33439038 aatacaatttatcttcttctgaccacgtgtataagcaaacaaagaacttcaaggacaaagataatgagcggataattcc 33438960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 328
Target Start/End: Complemental strand, 26898228 - 26898037
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaat 236  Q
    ||||||||||| |||| || ||| ||||||||| || || ||  ||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||     
T  26898228 tgagggacccaaaagatacatcaaatttgtccttttatgcagtcgtccctatcaagactctgatagtacaatttgtcttcttctgaccacgtgtagaaac 26898129  T
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    | |||||||||| |||| ||||| | ||| |||  |||||||  |||  ||||||| |||||||||||||||||||| || ||| |||||||    
T  26898128 atacaaagaactgcaaggacaaaaataattaacaaataattctagtttcagtaaagaaatttcaaatgtctaatcaatgagattatccatat 26898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 17316216 - 17316469
Alignment:
Q  24 aagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttggaagaccatcagactctgag 123  Q
    |||||||||||| ||||||||||    ||||||| |||||||||| |    ||||||| || | || | |||||||||   | || |||||||||||||     
T  17316216 aagaaaggtcaaccagaagtcaacgccttggatcggaagaaaggatgctaatcagaagatgaagatcttcatcagactctaaggatcatcagactctgaa 17316315  T
Q  124 gaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgac 223  Q
    | | | | |||| |||||||||||||   ||||||| ||||||| |||| ||||| |||||| ||||| | ||||||||||||||||||| |||||||||    
T  17316316 gtacaaaagatcttgagggacccagacaccacgtcagatttgtcttcttatgtagttgtctctatcaa-agtctgatagtacaatttgtcttcttctgac 17316414  T
Q  224 cacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattc 278  Q
    || ||||| ||| |||||| |||||| ||| ||||||| |||||| | |||||||    
T  17316415 catgtgtagaaacaaacaaggaactttaaggacaaagaaaatgaaagaataattc 17316469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 19003147 - 19003253
Alignment:
Q  223 ccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgt 322  Q
    |||| |||| ||| |||||||||| |||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||||||||||||||||||||||| |    
T  19003147 ccacatgtagaaacaaacaaagaatttcaaggacaaagagaatgaacggataatttcagttttagcaaagaaatttcaaatgtctaatcaacgacattat 19003246  T
Q  323 ccatatt 329  Q
     ||||||    
T  19003247 tcatatt 19003253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 18932728 - 18932816
Alignment:
Q  240 caaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    |||||||||| ||| |||||| ||||||||  |||||| | |||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  18932728 caaagaacttaaaggacaaagtgaatgaacatataattacagttgcagtaaaggaatttcaaatgcctaatcaacgacattatccatat 18932816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 22666402 - 22666294
Alignment:
Q  172 tctgtagatgtctcaatcaagactctgatagtacaattt-gtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacg 270  Q
    ||||||| ||| || ||||||  | |||||||||||||| ||| |||||| |||||||||| |||  |||||||||||||||| |||||||||||||||     
T  22666402 tctgtagttgtttctatcaagcatatgatagtacaattttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatgaaca 22666303  T
Q  271 gataattcc 279  Q
    |||||||||    
T  22666302 gataattcc 22666294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 17103326 - 17103434
Alignment:
Q  205 caatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatg 304  Q
    |||||| ||||||||| ||||| |||| | | | ||||||||||| ||| | ||||||||||||| ||||||||| |||| || |||| |||||||||||    
T  17103326 caatttttcctcttctaaccacatgtagatacagacaaagaactttaaggataaagagaatgaacagataattccagttgcagcaaagaaatttcaaatg 17103425  T
Q  305 tctaatcaa 313  Q
    |||| ||||    
T  17103426 tctattcaa 17103434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 320
Target Start/End: Original strand, 19960225 - 19960380
Alignment:
Q  163 ttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagag 262  Q
    ||||| ||||||| ||||||| | |||| ||||| ||| ||||| |||||| ||||||||||||||| ||||| | || |||||||||||  ||||   |    
T  19960225 ttgtcgtcttctgaagatgtcaccatca-gactcagatggtacactttgtcttcttctgaccacgtgcaaaaacatac-aagaacttcaaagacaattgg 19960322  T
Q  263 aatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacatt 320  Q
    |||||||  |||||||   ||| || |||||||||||||||||||  |||||||||||    
T  19960323 aatgaacaaataattctttttgaagcaaaggaatttcaaatgtcttttcaacgacatt 19960380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 12669098 - 12669169
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcc 279  Q
    |||||| |||||||||||| || ||||| | ||||||||||||||| |||||||||||||| ||||| ||||    
T  12669098 tttgtcttcttctgaccacatgcaaaaacagacaaagaacttcaaggacaaagagaatgaatggatacttcc 12669169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12668839 - 12668903
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    |||||||||||||  ||||||  |||||||||||| || |||||||||| |||||||||||||||    
T  12668839 aaaagactatggtacaagatccgaagaaaggtcaaccaaaagtcaatatcttggatcagaagaaa 12668903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 17496646 - 17496766
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtct 307  Q
    |||||| |||||||||||| |||| ||| | |||||||| |||||| |||||||||| |||| || | || | |||  |  |||||||||||||||| ||    
T  17496646 tttgtcttcttctgaccacatgtagaaacatacaaagaaattcaaggacaaagagaaagaacagaaattttcagtttcaacaaaggaatttcaaatgact 17496745  T
Q  308 aatcaacgacattgtccatat 328  Q
    | ||||||| ||| |||||||    
T  17496746 attcaacgaaattatccatat 17496766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 21721122 - 21721184
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaag 253  Q
    |||||| |||| ||||||||||| |||||||| || ||||||| | |||||||||||||||||    
T  21721122 agactcggatattacaatttgtcttcttctgatcatgtgtaaatacaaacaaagaacttcaag 21721184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 30805658 - 30805720
Alignment:
Q  6 actatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaagga 68  Q
    ||||||||  ||||||| |||||||||||| ||||||| || || ||||||||||||||||||    
T  30805658 actatggtagaagatctgaagaaaggtcaaccagaagtgaacatcttggatcagaagaaagga 30805720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 15787772 - 15787832
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaa 268  Q
    |||||| |||||||| |||||||| ||| ||| |||| |||||||| ||||||||||||||    
T  15787772 tttgtcttcttctgatcacgtgtagaaacaaataaaggacttcaaggacaaagagaatgaa 15787832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 11833396 - 11833338
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg 266  Q
    |||||| |||| |||||  ||| ||||||||||||||||||||||  ||||||||||||    
T  11833396 tttgtcttcttttgaccttgtgcaaaaataaacaaagaacttcaatgacaaagagaatg 11833338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 12893276 - 12893321
Alignment:
Q  207 atttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||||| |||||| |||||||||| ||| ||||||||||||||||    
T  12893276 atttgtcttcttctaaccacgtgtagaaacaaacaaagaacttcaa 12893321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 17103191 - 17103255
Alignment:
Q  54 gatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttggaagaccatcagact 118  Q
    |||||||||||||||  ||  | |||||||| | || |||||||||||| |||||||||||||||    
T  17103191 gatcagaagaaaggacatcatttagaagttgaagatttgcatcagactttgaagaccatcagact 17103255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 20619819 - 20619775
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    |||||||||||||||| ||||| | ||| ||||||||||||||||    
T  20619819 tttgtcctcttctgactacgtgcagaaacaaacaaagaacttcaa 20619775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 93 - 328
Target Start/End: Complemental strand, 28890507 - 28890273
Alignment:
Q  93 catcagacttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaag 192  Q
    |||||||||| |||||||  |||||||| | | | | | |||| ||||||||| |||   ||||||| |||  ||||||| ||||| |||||| |||||     
T  28890507 catcagactttgaagacctccagactctaaagtacaaaagatcttgagggacctagacaccacgtcagattcatcctcttatgtagttgtctctatcaa- 28890409  T
Q  193 actctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaag 292  Q
    | ||||||  ||||||||||||||||||||||| ||||| ||| |||||  |||||||||||||||||||||||||| || ||||||  || ||| ||||    
T  28890408 agtctgatcatacaatttgtcctcttctgaccatgtgtagaaacaaacatggaacttcaagaacaaagagaatgaacagaaaattccaattttagcaaag 28890309  T
Q  293 gaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    ||||||| |||||||||||||||||||| |||||||    
T  28890308 gaatttcgaatgtctaatcaacgacattatccatat 28890273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 24277135 - 24277301
Alignment:
Q  153 cacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||||| |||||||||||| ||| |||||||| ||| | |||||||||||||| ||| || |||||| |||||||||| ||  ||||||| ||||||||    
T  24277135 cacgtcagatttgtcctcttttgtggatgtctctatctaaactctgatagtacactttatcttcttctaaccacgtgtagaagcaaacaaataacttcaa 24277234  T
Q  253 gaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacat 319  Q
    | ||||||||||||||||||||||| | |||  | ||||||||||||||||||| ||||||||||||    
T  24277235 ggacaaagagaatgaacggataatttcagtttcaataaaggaatttcaaatgtcaaatcaacgacat 24277301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 23520944 - 23521089
Alignment:
Q  174 tgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggat 273  Q
    |||||||||||| || || |||||||| |||||||||||| |||| |||||||||||||||| | ||||| ||||||||| |||||||||||||| ||||    
T  23520944 tgtagatgtctctattaa-actctgattgtacaatttgtcatcttttgaccacgtgtaaaaacagacaaaaaacttcaaggacaaagagaatgaatggat 23521042  T
Q  274 aattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacatt 320  Q
    |||||  |||| || |||| |||||||||||||||||||||||||||    
T  23521043 aattcatgttgcagcaaagtaatttcaaatgtctaatcaacgacatt 23521089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 314
Target Start/End: Original strand, 23584870 - 23585022
Alignment:
Q  161 atttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaag 260  Q
    ||||||| |||| ||||| |||||| ||||| | |||||||||||| |||||| | ||||||||||||||| ||| ||||||||||||||||| ||||||    
T  23584870 atttgtcttcttttgtagctgtctctatcaa-agtctgatagtacactttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaag 23584968  T
Q  261 agaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
    |||||||||||||  |||  |||  |  |||| ||||||||||||| |||||||    
T  23584969 agaatgaacggattgttctagtttcaacaaagaaatttcaaatgtccaatcaac 23585022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 25724599 - 25724738
Alignment:
Q  141 ggacccagaagacacgtcatatttgtcctcttctgt-agatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaa 239  Q
    ||||||||| | ||||| | |||||||||||||| | || |||||| ||||||| ||||||||||||| ||||| |||| | |||||||||| | | |||    
T  25724599 ggacccagatgtcacgttagatttgtcctcttctatgagttgtctccatcaagaatctgatagtacaaattgtcttcttataaccacgtgtagatacaaa 25724698  T
Q  240 caaagaacttcaagaacaaagagaatgaacggataattcc 279  Q
    ||||||| |||||| |||||||||||||| ||||||||||    
T  25724699 caaagaatttcaaggacaaagagaatgaaaggataattcc 25724738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 25727535 - 25727607
Alignment:
Q  248 ttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacatt 320  Q
    |||||| |||||||||||| | ||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  25727535 ttcaaggacaaagagaatggaaggataattccaattgcagtaaaggaatttcaaatgtctaatcaacgacatt 25727607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 320
Target Start/End: Complemental strand, 26576783 - 26576601
Alignment:
Q  137 tgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaat 236  Q
    ||||||||| |||||  || ||| | ||||| |||||||||| |||||| |||| |||||  |||||||||||| || |||||| | | |||| | | |     
T  26576783 tgagggacctagaagcgacatcagacttgtcttcttctgtagctgtctctatca-gactccaatagtacaatttttcttcttctaatctcgtgcagatac 26576685  T
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacatt 320  Q
    ||||||||||||||||  ||||| |||||||||  |||||||| |||| |  ||||||||||||||| ||  ||||||||||||    
T  26576684 aaacaaagaacttcaaagacaaaaagaatgaacaaataattccagttgcaacaaaggaatttcaaatatcccatcaacgacatt 26576601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 329
Target Start/End: Original strand, 24502565 - 24502757
Alignment:
Q  137 tgagggacccagaagacacgtcata-tttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaa 235  Q
    ||||||||| ||||  || |||||| ||||| |||||||| || |||||| |||| ||||| |||| ||  ||||||| | |||| | || ||| | |||    
T  24502565 tgagggacctagaatccaagtcatactttgtgctcttctgaagttgtctctatca-gactcagataatatgatttgtcttattctaatcatgtgcagaaa 24502663  T
Q  236 taaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatatt 329  Q
     ||||||||||||| ||  |||||  |||||||| || |||||  |||| || ||||||||||||||||||  |||||||||||| ||||||||    
T  24502664 caaacaaagaactttaatgacaaaaggaatgaacagaaaattctagttgcagaaaaggaatttcaaatgtcccatcaacgacattatccatatt 24502757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 24308679 - 24308745
Alignment:
Q  2 aaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaagga 68  Q
    ||||||||||||  |||||||||||||||||||| |||||||||| |  |||||||| |||||||||    
T  24308679 aaagactatggtagaagatctaaagaaaggtcaaccagaagtcaacaccttggatcaaaagaaagga 24308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 25724468 - 25724528
Alignment:
Q  24 aagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttg 84  Q
    |||||||||||||||||||| || || ||||| ||||||||||||| || |||||||||||    
T  25724468 aagaaaggtcaatcagaagttaacattttggaccagaagaaaggaaatcactcagaagttg 25724528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 34062321 - 34062380
Alignment:
Q  193 actctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||||||||||||    
T  34062321 actctaatagtacaatttgtcttcttgtgaccacgtgcagaaacaaacaaagaacttcaa 34062380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 17872346 - 17872408
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaag 253  Q
    ||||||| |||||||||||||||||||||| || || || | ||  |||||||||||||||||    
T  17872346 agactctaatagtacaatttgtcctcttctaactacatgaagaaccaaacaaagaacttcaag 17872408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 25727340 - 25727445
Alignment:
Q  16 aagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttggaagaccatcag 115  Q
    ||||||| |||||||||||||||||||| || || ||  ||||||||||||||  || |||||||| || | ||   ||||| |||  ||||||||||||    
T  25727340 aagatctgaagaaaggtcaatcagaagttaacat-tttaatcagaagaaaggagatcactcagaagctgaagatcaacatcaaactctgaagaccatcag 25727438  T
Q  116 actctga 122  Q
    |||||||    
T  25727439 actctga 25727445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 6589405 - 6589446
Alignment:
Q  216 cttctgaccacgtgtaaaaataaacaaagaacttcaagaaca 257  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  6589405 cttctgaccacgtgcagaaacaaacaaagaacttcaagaaca 6589446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 26013878 - 26013724
Alignment:
Q  153 cacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    ||||||| ||||||| |||||||||| |||||| ||||| | ||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||    
T  26013878 cacgtcagatttgtcatcttctgtagttgtctctatcaaaa-tctgatagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaa 26013780  T
Q  253 gaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtcta 308  Q
    | | ||||||||  ||||||||||||| |||   | ||||||||||||||||||||    
T  26013779 ggaaaaagagaacaaacggataattcctgtttctgcaaaggaatttcaaatgtcta 26013724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 57 - 328
Target Start/End: Original strand, 26335413 - 26335683
Alignment:
Q  57 cagaagaaaggaagtcgctcagaagttgcaaatatgcatcagacttggaagaccatcagactctgaggaatataggatcatgagggacccagaagacac- 155  Q
    |||||||||||||||  |||||||| || | || |||| ||||||  ||||||||||| ||||||| | | ||| ||   ||||||||| |||||  ||     
T  26335413 cagaagaaaggaagttactcagaagctgaagatctgcaccagactctgaagaccatcatactctgaaggacataagactttgagggacctagaagcaaca 26335512  T
Q  156 gtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaa 255  Q
    |||| ||||||  ||||||| || | |||| |||| |||||||||||||||||||||||||||||||||| ||| | | | ||| ||||||| ||||| |    
T  26335513 gtcagatttgtgttcttctgaagctatctctatca-gactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaagga 26335611  T
Q  256 caaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    ||||   ||||||||||||||||| |||| || |||||||||||||||||||  |||| |||||| |||||||    
T  26335612 caaaagaaatgaacggataattccagttgcagcaaaggaatttcaaatgtcttttcaa-gacattatccatat 26335683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 132 - 314
Target Start/End: Complemental strand, 22826315 - 22826137
Alignment:
Q  132 gatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta 231  Q
    |||| |||||||||||||   ||||||  ||||||||| || ||||| | |||| ||||| | |||||||||||| ||| || |||||||||||||||||    
T  22826315 gatcttgagggacccagactccacgtctaatttgtcctattttgtagttttctctatcaa-agtctgatagtacagtttatcttcttctgaccacgtgta 22826217  T
Q  232 aaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
     ||| ||||||| || |||||| ||||| |||||||||||||||||||  || | | ||||||||||||||||||||||||||    
T  22826216 gaaacaaacaaaaaaattcaaggacaaatagaatgaacggataattcc--ttct-gcaaaggaatttcaaatgtctaatcaac 22826137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 27499958 - 27499799
Alignment:
Q  154 acgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaag 253  Q
    |||||| ||||||| |||| | ||| |||||| ||||| | || |||||||||||||||| |||| |||||||||||| ||| | ||||| ||||||||     
T  27499958 acgtcagatttgtcatcttttatagttgtctctatcaa-attcagatagtacaatttgtcatcttttgaccacgtgtagaaacagacaaataacttcaaa 27499860  T
Q  254 aacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
     | ||||||||||||||||||||| | |||| |||||| ||||||||| ||||||| ||||    
T  27499859 gataaagagaatgaacggataatttcagttggagtaaatgaatttcaattgtctaaccaac 27499799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 37336721 - 37336630
Alignment:
Q  221 gaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatca 312  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||  |||   | ||||||||||||||||||||||||    
T  37336721 gaccacgtgtagaaacaaacaaagaacttcaaggacaaagagaatgaacggataattcatgtttctgcaaaggaatttcaaatgtctaatca 37336630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 279
Target Start/End: Original strand, 24838274 - 24838436
Alignment:
Q  116 actctgaggaatataggatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcct 215  Q
    ||||||| ||| |||  |||||||||||||||||   ||||||| || |||| ||||  |||| |||||  ||||| | || ||| ||||| |||||| |    
T  24838274 actctgaagaacataatatcatgagggacccagacttcacgtcaaatatgtcatctttcgtagttgtctttatcaa-agtcagattgtacattttgtctt 24838372  T
Q  216 cttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcc 279  Q
    ||| ||| | |||||| ||| ||||||||||||||||| ||||| |  ||||| ||||||||||    
T  24838373 cttatgatcccgtgtataaacaaacaaagaacttcaaggacaaacatgatgaatggataattcc 24838436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 11848646 - 11848704
Alignment:
Q  194 ctctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaa 252  Q
    |||||||||||||||||||| |||| |||||||||| | ||| |||||||||| |||||    
T  11848646 ctctgatagtacaatttgtcttcttttgaccacgtgcagaaaaaaacaaagaaattcaa 11848704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 19903658 - 19903544
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagta 289  Q
    |||||||||| | |||||||||  |||||||||||||||   ||||||||||||||||| ||| ||||||  |||| |||  |||||| |  ||| || |    
T  19903658 agactctgatcgcacaatttgttatcttctgaccacgtgctgaaataaacaaagaactttaaggacaaaggcaatgaaacatataatttcaattgaagca 19903559  T
Q  290 aaggaatttcaaatg 304  Q
    |||||||||||||||    
T  19903558 aaggaatttcaaatg 19903544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 30608262 - 30608324
Alignment:
Q  215 tcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataatt 277  Q
    ||||||||| || |||| ||||  ||||||||||||| | |||||||||||||||||||||||    
T  30608262 tcttctgacaacatgtagaaatggacaaagaacttcatggacaaagagaatgaacggataatt 30608324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 37390369 - 37390243
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagta 289  Q
    ||||| |||||||||| ||| || |||||||||||| || | ||| ||||||||||||||||| | ||   ||||| ||| |||||||||  ||  || |    
T  37390369 agactttgatagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattccttttcaagca 37390270  T
Q  290 aaggaatttcaaatgtctaatcaacga 316  Q
    ||||||||||||||||||  |||||||    
T  37390269 aaggaatttcaaatgtcttttcaacga 37390243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 12859843 - 12859930
Alignment:
Q  241 aaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    |||||||||||||||||||  ||| |||   |||||| | |||| || |||||| |||||||||||  |||||||||||| |||||||    
T  12859843 aaagaacttcaagaacaaaaggaacgaaaatataatttcagttgcagcaaaggattttcaaatgtcacatcaacgacattatccatat 12859930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 22186131 - 22186064
Alignment:
Q  199 atagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg 266  Q
    ||||||||||||||| ||||||||| ||||| | ||| |||||||| | |||||  ||||||||||||    
T  22186131 atagtacaatttgtcttcttctgacaacgtgcagaaacaaacaaaggaattcaaagacaaagagaatg 22186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30608020 - 30608087
Alignment:
Q  1 aaaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaagga 68  Q
    |||||||||| ||  ||||| | |||||||||||| |||||||||| || | ||||||||||||||||    
T  30608020 aaaagactatagtagaagatatgaagaaaggtcaaccagaagtcaacatctaggatcagaagaaagga 30608087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 24492228 - 24492277
Alignment:
Q  16 aagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 65  Q
    |||| ||||||||||||| | |||||||||| || |||||||||||||||    
T  24492228 aagacctaaagaaaggtcgaccagaagtcaacatcttggatcagaagaaa 24492277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 9824593 - 9824553
Alignment:
Q  3 aagactatggttaaagatctaaagaaaggtcaatcagaagt 43  Q
    ||||||||||| |||||||||||| || |||||||||||||    
T  9824593 aagactatggtaaaagatctaaaggaaagtcaatcagaagt 9824553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 161 - 328
Target Start/End: Original strand, 10814741 - 10814907
Alignment:
Q  161 atttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaag 260  Q
    ||||||| | |||||||| |||| | ||||| | |||||||||| ||||||||   ||||||||||||||| ||| ||||||||||||| ||| ||||||    
T  10814741 atttgtcatattctgtagttgtcactatcaa-agtctgatagtataatttgtctcattctgaccacgtgtagaaacaaacaaagaacttaaaggacaaag 10814839  T
Q  261 agaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    ||||||||||||||||| | |||   | |||||||||||||||||||||| ||||  ||| |||||||    
T  10814840 agaatgaacggataatttcagtttctgcaaaggaatttcaaatgtctaattaacggaattatccatat 10814907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 4097753 - 4097888
Alignment:
Q  193 actctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaag 292  Q
    ||||| |||||||| |||||  || ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||   |  |  ||||    
T  4097753 actctaatagtacagtttgtgttcatctgaccacatgtagaaataaacaaagaacttcaaggacaaagagaatgaaccgataattccatattcaacaaag 4097852  T
Q  293 gaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    ||||||||||| ||||||||| |||||| |||||||    
T  4097853 gaatttcaaatttctaatcaaagacattatccatat 4097888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 316
Target Start/End: Complemental strand, 4312553 - 4312370
Alignment:
Q  132 gatcatgagggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgta 231  Q
    |||| |||||||||||||   ||||||| |||||||||||| ||||| |||||| ||||| | |||||||||| | ||| || |||||| ||||| ||||    
T  4312553 gatcttgagggacccagactccacgtcagatttgtcctcttatgtagttgtctctatcaa-agtctgatagtagagtttatcttcttctaaccacatgta 4312455  T
Q  232 aaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacga 316  Q
     ||| ||||||| |||||||||  |||| | ||||| | ||||||||| ||| | | ||| ||||||||||||| ||||||||||    
T  4312454 gaaacaaacaaataacttcaagggcaaataaaatgaccagataattccagtttttgcaaaagaatttcaaatgtttaatcaacga 4312370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 197 - 329
Target Start/End: Original strand, 11703962 - 11704094
Alignment:
Q  197 tgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaat 296  Q
    |||||||||| ||| || ||||| || ||| |||| ||| ||||||||||||||||| |||||||||||||||| |||||||| |||  || |||||| |    
T  11703962 tgatagtacagtttctcttcttccgagcacatgtataaacaaacaaagaacttcaagtacaaagagaatgaacgaataattccagtttcagcaaaggatt 11704061  T
Q  297 ttcaaatgtctaatcaacgacattgtccatatt 329  Q
    ||||||| |||||||||| ||||| || |||||    
T  11704062 ttcaaatatctaatcaacaacattatctatatt 11704094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 313
Target Start/End: Original strand, 22562679 - 22562852
Alignment:
Q  139 agggacccagaagacacgtcatatttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataa 238  Q
    ||||||||| ||  ||||||| |||| ||||||||||||| |||||| || || | |||||||||||| |||||  ||||||||||||||||| ||| ||    
T  22562679 agggacccataatccacgtcagatttttcctcttctgtagttgtctctataaa-agtctgatagtacagtttgttttcttctgaccacgtgtagaaacaa 22562777  T
Q  239 acaaagaacttcaagaacaaagagaatgaacggataattcccg-ttgtagtaaaggaatttcaaatgtctaatcaa 313  Q
    |||||  | |||||| ||||||||| |||| |||||||||  | || || | ||||||||||||||||||||||||    
T  22562778 acaaattaattcaaggacaaagagagtgaatggataattcatgtttctact-aaggaatttcaaatgtctaatcaa 22562852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 328
Target Start/End: Complemental strand, 24575978 - 24575787
Alignment:
Q  137 tgagggacccagaagacacgtcata-tttgtcctcttctgtagatgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaa 235  Q
    ||||||||| ||||| ||||||| | |||||  ||||||| || |||||| ||||  |||  |||||||||| ||||| |||||||| ||| || | | |    
T  24575978 tgagggacctagaagccacgtcaaactttgttttcttctgaagttgtctctatcat-acttagatagtacaacttgtcttcttctgatcacatgcatata 24575880  T
Q  236 taaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
    |||| ||||||||||||| |||||  |||||||| ||||||||| |||| |  ||||||||||||||||||   ||||||||||| |||||||    
T  24575879 taaataaagaacttcaaggacaaaaggaatgaacagataattccagttgcatcaaaggaatttcaaatgtcacgtcaacgacattatccatat 24575787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 328
Target Start/End: Complemental strand, 10821222 - 10821109
Alignment:
Q  215 tcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaac 314  Q
    ||||||||||||||||| |||   | |||| |||| ||| ||||||| |||||||| |||||||| |||  || ||| |||||||||||| ||| |||||    
T  10821222 tcttctgaccacgtgtagaaacggaaaaaggactttaaggacaaagaaaatgaacgaataattccagtttcagcaaaagaatttcaaatggctattcaac 10821123  T
Q  315 gacattgtccatat 328  Q
    || ||| |||||||    
T  10821122 gaaattatccatat 10821109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 4312700 - 4312638
Alignment:
Q  2 aaagactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaa 64  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  4312700 aaagactatggtagaagatctgaagaaaggtcaatcaaaagtcaacaccttggatcagaagaa 4312638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 19691909 - 19691975
Alignment:
Q  192 gactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaa 258  Q
    ||||||||||||  |||||||||||||||||| | ||||| ||| ||||||||| ||||||| ||||    
T  19691909 gactctgatagtttaatttgtcctcttctgactatgtgtagaaacaaacaaagagcttcaaggacaa 19691975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 1558594 - 1558514
Alignment:
Q  237 aaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgac 317  Q
    |||||||||| || ||| || || ||||||||| || |||||| |||| |||||| ||| ||||||||||| |||||||||    
T  1558594 aaacaaagaaatttaaggactaaaagaatgaacagacaattccagttgcagtaaatgaacttcaaatgtctcatcaacgac 1558514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 21747184 - 21747041
Alignment:
Q  180 tgtctcaatcaagactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcc 279  Q
    |||||| || |||||| | ||||| |||||| || ||||||||||||||| | | | ||||||||||||||||  |||     |||||  | ||||||||    
T  21747184 tgtctctattaagactttaatagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaacttcaaagaca-----aatgacagtataattcc 21747090  T
Q  280 cgttgtagtaaaggaatttcaaatgtctaatcaacgacattgtccatat 328  Q
     |||| |  ||| |||||||||||||||| | ||||||||| |||||||    
T  21747089 agttgcaacaaacgaatttcaaatgtctattgaacgacattatccatat 21747041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 21747351 - 21747306
Alignment:
Q  24 aagaaaggtcaatcagaagtcaatatgttggatcagaagaaaggaa 69  Q
    |||||| |||||||||||||||| ||||||||||  ||||||||||    
T  21747351 aagaaatgtcaatcagaagtcaacatgttggatcttaagaaaggaa 21747306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 6003 - 5886
Alignment:
Q  197 tgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaat 296  Q
    ||||| |||| |||||| ||||||||| ||||||||||| ||| ||||||||||| | ||||||||||||||  ||||||||  |||  || ||||||||    
T  6003 tgataatacagtttgtcttcttctgacaacgtgtaaaaacaaagaaagaacttcagggacaaagagaatgaatagataattcaagtttcagcaaaggaat 5904  T
Q  297 ttcaaatgtctaatcaac 314  Q
    ||||||||||||||||||    
T  5903 ttcaaatgtctaatcaac 5886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 7342 - 7282
Alignment:
Q  198 gatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaa 258  Q
    |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||    
T  7342 gataatacaatttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaa 7282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 1368 - 1308
Alignment:
Q  198 gatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaa 258  Q
    |||| |||| |||||||||||||||||||||| | ||| ||||||||||||||||| ||||    
T  1368 gataatacagtttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaa 1308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 42181 - 42236
Alignment:
Q  224 cacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcc 279  Q
    |||||||| ||| ||||||||||||||||| ||||| |||| ||||||||||||||    
T  42181 cacgtgtagaaacaaacaaagaacttcaaggacaaaaagaaagaacggataattcc 42236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 643 - 713
Alignment:
Q  247 cttcaagaacaaagagaatgaacggataattcccgttgtagtaaaggaatttcaaatgtctaatcaacgac 317  Q
    ||||||| ||||| |||||||||| ||||| || |||| |||||| ||||||||||||||  |||||||||    
T  643 cttcaaggacaaaaagaatgaacgaataatcccagttgcagtaaatgaatttcaaatgtcccatcaacgac 713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 320
Target Start/End: Complemental strand, 4438 - 4310
Alignment:
Q  191 agactctgatagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatgaacggataattcccgttgtagtaa 290  Q
    |||||| ||||||| | |||||| |||||||| |||||| | | | |||||| |||||||||| |||||  ||||||||||||||||||   |  |  ||    
T  4438 agactcagatagtatattttgtcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaacggataattccttgttcaacaa 4340  T
Q  291 aggaatttcaaatgtctaatcaacgacatt 320  Q
    |||||||||||||| ||  |||||||||||    
T  4339 aggaatttcaaatgacttttcaacgacatt 4310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 1622 - 1693
Alignment:
Q  208 tttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattc 278  Q
    |||||| |||| || | ||||||  ||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  1622 tttgtcttcttttgtctacgtgtgcaaacaaacaaagaacctcaagaacaaagagaatgcaacggataattc 1693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University