View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10721_low_8 (Length: 318)
Name: NF10721_low_8
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10721_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 24230342 - 24230609
Alignment:
| Q |
19 |
cacctaacattaacagtagaagaaaaaactagcagaagaagaagactctaacgaagaaaatggacacatgacattcatgcattctatatgttagtttatg |
118 |
Q |
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| T |
24230342 |
cacctaacattaacagtagaagaaaaaactagcagaagaagaagactctaaggaagaaaatggacacatcacattcatgcattctatatgttagtttatg |
24230441 |
T |
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| Q |
119 |
ttttttcttctataaatagtacaatcaaactcaatgcaaaggagttcattttcattccaaaaacttatttgcgttataacaatccgtcgtcataagataa |
218 |
Q |
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| T |
24230442 |
ttttttcttctataaatagtacaatcaaactcaatgcaaaggagttcattttcattccaaaaacttgtttgcgtaataacaatccgccgtcataagataa |
24230541 |
T |
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| Q |
219 |
tacatcttactggttgttgaaatgaacgatgaatgtaactcacttttatttataataatatcatcttc |
286 |
Q |
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| T |
24230542 |
tacatcttactggttgttgaaatgatcgatgaatgtacctcacttttagttataataatatcaccttc |
24230609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29456759 - 29456817
Alignment:
| Q |
126 |
ttctataaatagtacaatcaaactcaatgcaaaggagttcattttcattccaaaaactt |
184 |
Q |
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| T |
29456759 |
ttctataaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaactt |
29456817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 41106810 - 41106758
Alignment:
| Q |
129 |
tataaatagtacaatcaaactcaatgcaaaggagttcattttcattccaaaaa |
181 |
Q |
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| T |
41106810 |
tataaatagtagaatcaaactccatgcaaaagagtttattttcatttcaaaaa |
41106758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 27875434 - 27875389
Alignment:
| Q |
141 |
aatcaaactcaatgcaaaggagttcattttcattccaaaaacttat |
186 |
Q |
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| T |
27875434 |
aatcaaacttgatgtaaaggagttcattttcattccaaaatcttat |
27875389 |
T |
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