View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10721_low_9 (Length: 307)

Name: NF10721_low_9
Description: NF10721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10721_low_9
NF10721_low_9
[»] chr7 (1 HSPs)
chr7 (1-292)||(12357989-12358280)
[»] scaffold1587 (1 HSPs)
scaffold1587 (1-157)||(1137-1293)
[»] chr3 (4 HSPs)
chr3 (4-207)||(23907487-23907690)
chr3 (187-273)||(33578658-33578744)
chr3 (1-45)||(21828560-21828604)
chr3 (184-220)||(21654579-21654615)
[»] chr4 (9 HSPs)
chr4 (11-240)||(25366939-25367168)
chr4 (185-289)||(17331761-17331865)
chr4 (185-240)||(24912481-24912535)
chr4 (132-189)||(32022560-32022617)
chr4 (1-45)||(10577170-10577214)
chr4 (184-236)||(13273659-13273711)
chr4 (1-45)||(39134147-39134191)
chr4 (1-64)||(34667405-34667468)
chr4 (1-45)||(4733413-4733457)
[»] chr5 (1 HSPs)
chr5 (138-234)||(19443621-19443717)
[»] chr8 (3 HSPs)
chr8 (1-45)||(23876651-23876695)
chr8 (1-46)||(12774222-12774267)
chr8 (1-45)||(5154483-5154527)
[»] chr1 (5 HSPs)
chr1 (184-220)||(15416234-15416270)
chr1 (1-45)||(23421018-23421062)
chr1 (184-219)||(25964544-25964579)
chr1 (184-217)||(18396338-18396371)
chr1 (1-45)||(31314256-31314300)
[»] chr2 (2 HSPs)
chr2 (203-276)||(15453648-15453721)
chr2 (185-217)||(14962924-14962956)
[»] chr6 (3 HSPs)
chr6 (1-45)||(10976426-10976470)
chr6 (1-45)||(26499215-26499259)
chr6 (1-45)||(32929827-32929871)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 12358280 - 12357989
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatgctacattcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtat 100  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12358280 ttttattcaatttatgattcaagtgtctgatttaatttgcatatgctacattcttaatgcttttcgattagaggttaaccttgtctctcggctaaggtat 12358181  T
Q  101 aggattgactatcatgacggtgtccaaaaaagaacagtagtaaattcctcattttaatgtaatctcttttaatttaaatacatgtatgattgttagggtt 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12358180 aggattgactatcatgccggtgtccaaaaaagaacagtagtaaattcctcattttaaagtaatctcttttaatttaaatacatgtatgattgttagggtt 12358081  T
Q  201 atgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgttacattatggggtcatgttct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12358080 atgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgttacatcatggggtcatgttct 12357989  T

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Target: scaffold1587 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1587
Description:

Target: scaffold1587; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1293 - 1137
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatgctacattcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtat 100  Q
    |||||||||  ||||||||||| ||||| || | ||||||||||| || | | |||||||||||| | ||| |||||||||  ||||| |||||||||||    
T  1293 ttttattcatattatgattcaaatgtcttatttaatttgtatatgttatacttttaatgcttttcaactagcggttgacctactctctaggctaaggtat 1194  T
Q  101 aggattgactatcatgacggtgtccaaaaaagaacagtagtaaattcctcattttaa 157  Q
    | || |||||||| || ||||| | ||| | ||||| ||||||||| || |||||||    
T  1193 atgactgactatcttgccggtgcctaaacatgaacaatagtaaattgcttattttaa 1137  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 23907690 - 23907487
Alignment:
Q  4 tattcaatttatgattcaagtgtctgatatgatttgtatatgctacattcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtatagg 103  Q
    |||| ||||||||||||||||||||||| | ||||||||| | | ||||||||||| ||||| | ||  |||| ||||  ||| | ||||||||| ||      
T  23907690 tatttaatttatgattcaagtgtctgatttaatttgtataagttccattcttaatgtttttcaactaacggttaacctgatctataggctaaggtttatt 23907591  T
Q  104 attgactatcatgacggtgtccaaaaaagaacagtagtaaattcctcattttaatgtaatctcttttaatttaaatacatgtatgattgttagggttatg 203  Q
    | |||||||| |   |||| || || |||||| ||| |||||| || |||||||  ||||||||||||| ||||||| | |||| | ||||| |||||||    
T  23907590 actgactatccttttggtgcccgaataagaacggtaataaatttcttattttaaattaatctcttttaaattaaatataagtataactgttaaggttatg 23907491  T
Q  204 attc 207  Q
    ||||    
T  23907490 attc 23907487  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 33578658 - 33578744
Alignment:
Q  187 tgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgtta 273  Q
    |||||||||| |||||||||||||||||||  ||| || |||||||||||||||   | ||| |||||| ||||||||||| |||||    
T  33578658 tgattgttagagttatgattcatctttaggagaacatcacaagtatagcctttgtcacggcacaaatactcaaacttcccaccgtta 33578744  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21828604 - 21828560
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||    
T  21828604 ttttattcagtttatgattcaagtgtctgatttaatttgtatatg 21828560  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 21654579 - 21654615
Alignment:
Q  184 gtatgattgttagggttatgattcatctttagggaaa 220  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  21654579 gtatgattgttagggttatgattcctctttcgggaaa 21654615  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 25366939 - 25367168
Alignment:
Q  11 tttatgattcaagtgtctgatatgatttgtatatgctacattcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtataggattgact 110  Q
    |||||||||||| ||| |||| | ||||||||||| | |||||| |||| ||||| || || |||| ||||  ||| | || ||||||||| || |||||    
T  25366939 tttatgattcaattgtttgatttaatttgtatatgtttcattctcaatgtttttcaatgagtggttaacctgatctataggttaaggtatatgactgact 25367038  T
Q  111 atcatgacggtgtccaaaaaagaacagtagtaaattcctcattt--taatgtaatctcttttaatttaaatacatgtatgattgttagggttatgattca 208  Q
    ||| ||  |||| ||||| |||||  |||||||||| || ||||  |||  |||| |||||||| || ||||   |||||||||||||| ||||||||||    
T  25367039 atcttgttggtgcccaaacaagaatggtagtaaattacttattttctaaattaatttcttttaa-ttgaatatgagtatgattgttaggtttatgattca 25367137  T
Q  209 tctttagggaaacgtcccaagtatagcctttg 240  Q
    ||||| ||| || ||  |||||||||||||||    
T  25367138 tcttttggggaa-gttgcaagtatagcctttg 25367168  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 17331865 - 17331761
Alignment:
Q  185 tatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgttacattatggggt 284  Q
    |||||||||||  | |||||||||| ||||||| |||||| |||||||| ||||||  || ||| |||||| | ||||||||| |||||||| | |||||    
T  17331865 tatgattgttatagctatgattcatttttaggggaacgtcgcaagtataacctttgtcgcggcacaaatactcgaacttcccaccgttacatcacggggt 17331766  T
Q  285 catgt 289  Q
    |||||    
T  17331765 catgt 17331761  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 24912535 - 24912481
Alignment:
Q  185 tatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttg 240  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  24912535 tatgattgttagggttatgattcatctttaggggaa-gtcgcaagtatagcctttg 24912481  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 32022560 - 32022617
Alignment:
Q  132 gaacagtagtaaattcctcattttaatgtaatctcttttaatttaaatacatgtatga 189  Q
    ||||||||||||||| || |||||||  ||||||||||||| ||||||||| ||||||    
T  32022560 gaacagtagtaaattgcttattttaaattaatctcttttaaattaaatacaagtatga 32022617  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10577170 - 10577214
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||    
T  10577170 ttttattcagtttatgattcaagtgtctgatttaatttgtatatg 10577214  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 13273711 - 13273659
Alignment:
Q  184 gtatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcc 236  Q
    ||||||||||| |||||||| ||||||||||||| |||||  |||||||||||    
T  13273711 gtatgattgtttgggttatggttcatctttaggggaacgttgcaagtatagcc 13273659  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39134191 - 39134147
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    |||||||||||||||||||||||||| |||| | |||||||||||    
T  39134191 ttttattcaatttatgattcaagtgtttgatttaatttgtatatg 39134147  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34667405 - 34667468
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatgctacattcttaatgctttt 64  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||||| |   ||||||||||||||    
T  34667405 ttttattcagtttataattcaagtgtctgatttaatttgtatatgttcagttcttaatgctttt 34667468  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4733413 - 4733457
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    |||||||||||||||||||||| | |||||| | |||||||||||    
T  4733413 ttttattcaatttatgattcaactatctgatttaatttgtatatg 4733457  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 19443717 - 19443621
Alignment:
Q  138 tagtaaattcctcattttaatgtaatctcttttaatttaaatacatgtatgattgttagggttatgattcatctttagggaaacgtcccaagtatag 234  Q
    ||||||||| || |||||||  ||||||||||||| ||||| | |  |||||||||||  |||||||||||||||||  ||||| || |||||||||    
T  19443717 tagtaaattgcttattttaaattaatctcttttaaattaaacataaatatgattgttaaagttatgattcatctttaaagaaacatcgcaagtatag 19443621  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23876651 - 23876695
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||    
T  23876651 ttttattcaatttataattcaagtgtctgatttaatttgtatatg 23876695  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12774267 - 12774222
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatgc 46  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||||||    
T  12774267 ttttattcagtttataattcaagtgtctgatttaatttgtatatgc 12774222  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5154483 - 5154527
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    |||||||||||||||||||||||||| |||| | ||| |||||||    
T  5154483 ttttattcaatttatgattcaagtgtgtgatttaattagtatatg 5154527  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 15416270 - 15416234
Alignment:
Q  184 gtatgattgttagggttatgattcatctttagggaaa 220  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15416270 gtatgattgttagggttatgattcatctttaaggaaa 15416234  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23421062 - 23421018
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||    
T  23421062 ttttattcagtttatgattcaagtgtcagatttgatttgtatatg 23421018  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 25964579 - 25964544
Alignment:
Q  184 gtatgattgttagggttatgattcatctttagggaa 219  Q
    |||||||||||||| |||||||||||||||||||||    
T  25964579 gtatgattgttaggattatgattcatctttagggaa 25964544  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 18396338 - 18396371
Alignment:
Q  184 gtatgattgttagggttatgattcatctttaggg 217  Q
    ||||||||| ||||||||||||||||||||||||    
T  18396338 gtatgattgatagggttatgattcatctttaggg 18396371  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31314256 - 31314300
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    ||||||||||| ||||||| ||||||||||| | |||||||||||    
T  31314256 ttttattcaatgtatgatttaagtgtctgatttaatttgtatatg 31314300  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 15453721 - 15453648
Alignment:
Q  203 gattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgttacat 276  Q
    ||||||||||||||| |||||| ||||||||| |||||  |||||| ||||||   ||||||||  ||||||||    
T  15453721 gattcatctttaggggaacgtcgcaagtatagtctttgtcgcagcacaaatacttgaacttcccgccgttacat 15453648  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 14962956 - 14962924
Alignment:
Q  185 tatgattgttagggttatgattcatctttaggg 217  Q
    |||||||||||| ||||||||||||||||||||    
T  14962956 tatgattgttagtgttatgattcatctttaggg 14962924  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10976470 - 10976426
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    |||||| || ||||||||||||||||||||| | |||||||||||    
T  10976470 ttttatccagtttatgattcaagtgtctgatttaatttgtatatg 10976426  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26499259 - 26499215
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    |||||| |||||||||||||||||||||| | | |||||||||||    
T  26499259 ttttatacaatttatgattcaagtgtctggtttaatttgtatatg 26499215  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32929871 - 32929827
Alignment:
Q  1 ttttattcaatttatgattcaagtgtctgatatgatttgtatatg 45  Q
    ||||||| | ||||||||||||||||||||| | |||||||||||    
T  32929871 ttttatttagtttatgattcaagtgtctgatttaatttgtatatg 32929827  T

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