View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_1 (Length: 569)
Name: NF10722_high_1
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 43410289 - 43409749
Alignment:
| Q |
16 |
gttatcattaccatcaccaccattagcagttgcagtgctcaactctgggaagctggcatagaaagagccaatctgtatggcaccctctgcaccttgaaca |
115 |
Q |
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| T |
43410289 |
gttatcattaccatcaccaccattagcagttgcattgctcaactctgggaagctggcatagaaagagccaatctgtatggcaccctctgcaccttgaaca |
43410190 |
T |
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| Q |
116 |
gaatcaatcacaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgtctgcatatccttttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410189 |
gaatcaatcacaagttgtagcttctttaaagagtggcccaccttctttatttttcttgaaggccatcttgtaatcccatgctgtctgcatatccttttca |
43410090 |
T |
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| Q |
216 |
gagttgtaggacacactgtatcacaaaattattatatatttaattactttcagattgtgattgagatcgagttgttggataataatatccatgacatagt |
315 |
Q |
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| T |
43410089 |
gagttgtaggacacactgtatcacaaaattattat----ttaattactt-cagattgtgattgagatcgagttgttggataataatatccatgacatagt |
43409995 |
T |
|
| Q |
316 |
tttatttaattaattaattaa----aactgaaattgaattttacaagtcacttaccaccgatgctctttgcagcgtcctttaggcttccggcaaagtatt |
411 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43409994 |
tttatttaattaattaattaattaaaactgaaattgaattttacaagtcacttaccaccgatgctctttgcggcgtcctttaggcttccggcaaagtatt |
43409895 |
T |
|
| Q |
412 |
gtctcagaaccggcaagcttatagtcttctccgccttggttcttcgcttgtccccggactttctcccactcgaagaagaagacgaccggcgaccacaggc |
511 |
Q |
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| T |
43409894 |
gtctcagaaccggcaagcttatagtcttctccgccttggttcttcgcttgtccccggactttctcccactcgaagaagaagacgaccggcgaccacaggc |
43409795 |
T |
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| Q |
512 |
accaggagattcttcaccagcttctacacttacaacacttgccctt |
557 |
Q |
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| T |
43409794 |
accaggagattcttcaccagcttctacacttacaacacttgccctt |
43409749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 25531416 - 25531358
Alignment:
| Q |
176 |
ggccatcttgtaatcccatgctgtctgcatatccttttcagagttgtaggacacactgt |
234 |
Q |
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| T |
25531416 |
ggccatcttgaaattccatgttgtctgcatattctcttcagagttgttggacaaactgt |
25531358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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