View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_high_12 (Length: 345)

Name: NF10722_high_12
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_high_12
NF10722_high_12
[»] chr2 (18 HSPs)
chr2 (1-337)||(9328917-9329253)
chr2 (49-309)||(9321325-9321582)
chr2 (51-235)||(9316448-9316632)
chr2 (53-328)||(9292261-9292530)
chr2 (11-234)||(9357604-9357824)
chr2 (49-220)||(10353556-10353727)
chr2 (56-226)||(9283721-9283891)
chr2 (52-219)||(10348227-10348385)
chr2 (55-226)||(9060665-9060836)
chr2 (56-147)||(9275029-9275120)
chr2 (157-220)||(10372305-10372368)
chr2 (161-226)||(10336273-10336338)
chr2 (167-328)||(9274845-9275000)
chr2 (117-226)||(7115231-7115340)
chr2 (51-120)||(8573031-8573100)
chr2 (261-322)||(9283923-9283984)
chr2 (49-125)||(10372391-10372467)
chr2 (259-328)||(10348121-10348190)
[»] chr4 (1 HSPs)
chr4 (49-220)||(26575308-26575479)
[»] chr3 (2 HSPs)
chr3 (8-226)||(37462927-37463145)
chr3 (259-303)||(37462853-37462897)
[»] scaffold0667 (2 HSPs)
scaffold0667 (157-226)||(4912-4981)
scaffold0667 (51-114)||(5018-5081)
[»] chr8 (1 HSPs)
chr8 (164-226)||(41966362-41966424)
[»] chr1 (2 HSPs)
chr1 (164-225)||(29467429-29467489)
chr1 (164-220)||(29423703-29423759)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 9329253 - 9328917
Alignment:
Q  1 cctcattgctatctcctatggcccaatcgcttttagggaccctaactgccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  9329253 cctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatc 9329154  T
Q  101 cctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329153 cctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtg 9329054  T
Q  201 attacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329053 attacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaa 9328954  T
Q  301 aattattcctgctatgccctacgctcttgtctctgct 337  Q
    ||| |||||||||||||||||||||||||||| ||||    
T  9328953 aataattcctgctatgccctacgctcttgtctatgct 9328917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 49 - 309
Target Start/End: Complemental strand, 9321582 - 9321325
Alignment:
Q  49 ccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatc 148  Q
    ||||||||||||||||||||||| ||||| ||| |||||  ||||||| |||||||||||||||||| |||||||| ||||| | ||||| |||||||||    
T  9321582 ccccaacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatc 9321483  T
Q  149 cgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagat 248  Q
      ||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||  ||||    | |  |    
T  9321482 aatcgctgctgcttatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcctctcca---cacaact 9321386  T
Q  249 cctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcc 309  Q
    | | || || | |||||||||||||||||| ||||| ||||||||| |||||||| |||||    
T  9321385 ctttttatgattcacatgtcagactcttcagctctataacaaactcgtggaaaataattcc 9321325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 51 - 235
Target Start/End: Complemental strand, 9316632 - 9316448
Alignment:
Q  51 ccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccg 150  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |      
T  9316632 ccaacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaa 9316533  T
Q  151 tcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgat 235  Q
    ||||  |    ||||||||||||| |||||||||||||| | | | |||||||||||||||||||||||  ||||||| ||||||    
T  9316532 tcgcggcggtatatgcgttcacggcttcggttttgatccatcaacaggtgattacaaactcctcagaatttcttggatggccgat 9316448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 53 - 328
Target Start/End: Complemental strand, 9292530 - 9292261
Alignment:
Q  53 aacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtc 152  Q
    |||||||||||| ||| || ||||||||| | |||| |||| ||||||||||| || ||||||||||||||||||||||| || ||||| |||||   ||    
T  9292530 aacgaaatcacagtcttgaaccctaacactcataaacatcggattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatc 9292431  T
Q  153 gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctc 252  Q
    ||  |    ||||||||||||| ||||||| |||||| ||| |||| ||||||||||||||||||||| ||||||||||||| | | ||      | |||    
T  9292430 gcgccggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacat------tactc 9292337  T
Q  253 ttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 328  Q
    ||||| |||||| || |||||||||| ||| ||||| ||||| |||||||| ||||||  |||||| |||||||||    
T  9292336 ttttgatccacaggtgagactcttcagctccaaaactaactcgtggaaaatcattcctagtatgccgtacgctctt 9292261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 9357824 - 9357604
Alignment:
Q  11 atctcctatggcccaatcgcttttagggaccctaactgccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctac 110  Q
    |||||| |||||  ||||||||| ||| | ||||||  | ||||||||||| ||||||||| || ||||| ||||||| |||  |||||||||||||| |    
T  9357824 atctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgtaaacatcacattatccctttcctcc 9357725  T
Q  111 ctcttgctatccctaacattcttgaatctgacaacatc--cgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaa 208  Q
    ||||| ||||||||||||||||   ||||  ||||||   || || |      ||||||||||||| |||||||||||||||||| |||| |||||||||    
T  9357724 ctcttcctatccctaacattctccgatctttcaacattgacggcggtg-----tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaa 9357630  T
Q  209 ctcctcagaatcgcttggatagccga 234  Q
    |||||||||||| |||||||||||||    
T  9357629 ctcctcagaatctcttggatagccga 9357604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 10353727 - 10353556
Alignment:
Q  49 ccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaac--- 145  Q
    |||||||||||||||||| |||| ||| |||||||||||  |||| ||||||||||| || |||||| ||||||||||||||||  |||||||||||       
T  10353727 ccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctccaatctgacaaccct 10353628  T
Q  146 atccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 220  Q
    | |||| |   || |||||||||||| || |||||||||||| || ||||||| |||||||||||||||||||||    
T  10353627 aaccgtgg---ctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatc 10353556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 9283721 - 9283891
Alignment:
Q  56 gaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgct 155  Q
    |||||||||||||||| | |||||||||||||| || | ||||||||||| || |||||| |||||||||||||| | || ||||| |||||    |||     
T  9283721 gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg 9283820  T
Q  156 tctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 226  Q
     |    ||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  9283821 gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttgg 9283891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 10348385 - 10348227
Alignment:
Q  52 caacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgt 151  Q
    |||||||||||||||||||| |||||||||||||||| |||  ||||||||||| || |||||| |||| ||||   ||||| | |  ||| |||   |     
T  10348385 caacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta---ttcttaactacgacgacaaatg- 10348290  T
Q  152 cgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaat 219  Q
         |||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||    
T  10348289 -----ctccttatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 9060665 - 9060836
Alignment:
Q  55 cgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccgtcgc 154  Q
    ||||| ||||||||||| |||||||||||| ||| |||| |  ||||||||  | |||||| ||||||||||||||   || |||||||||  |  ||||    
T  9060665 cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc 9060764  T
Q  155 ttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 226  Q
      |    ||||||||||||| |||||||||||||| ||  |||  ||||||||||||||||||||| |||||    
T  9060765 ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttgg 9060836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 9275120 - 9275029
Alignment:
Q  56 gaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacat 147  Q
    ||||| |||||||||| |||||||||| ||||| |||| ||||||||||| || |||||| |||| |||||||||||  |||| ||||||||    
T  9275120 gaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctatacctaacattctcaaatcagacaacat 9275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 10372368 - 10372305
Alignment:
Q  157 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 220  Q
    ||||||||||||||| || |||||||||||| |||||||||| ||| |||||||||||||||||    
T  10372368 ctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatc 10372305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 10336338 - 10336273
Alignment:
Q  161 ttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 226  Q
    |||||||||||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttgg 10336273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 328
Target Start/End: Complemental strand, 9275000 - 9274845
Alignment:
Q  167 gttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatg 266  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| | ||| |||| |||  | ||      | ||||||||   ||||||    
T  9275000 gttcacggttttggttttgatcctttatccggcgattataaacttctcagaatctcatggttagctgatatacat------tactcttttgaatcacatg 9274907  T
Q  267 tcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 328  Q
    | |||||||||| ||  ||||||||||| |||||||| |||||   |||||| |||||||||    
T  9274906 tgagactcttcagcttgaaaacaaactcgtggaaaataattcccagtatgccgtacgctctt 9274845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 7115231 - 7115340
Alignment:
Q  117 ctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcag 216  Q
    |||||||||||||| || ||||||||| ||||  | ||||     ||||| ||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  7115231 ctatccctaacattattcaatctgacatcatcaatggcttaggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcag 7115330  T
Q  217 aatcgcttgg 226  Q
    |||| |||||    
T  7115331 aatctcttgg 7115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 8573031 - 8573100
Alignment:
Q  51 ccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctat 120  Q
    ||||| ||||| ||||||||| |||||||||||||||| |||  ||||||||||| || |||||| ||||    
T  8573031 ccaaccaaatcgcaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctat 8573100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 9283923 - 9283984
Alignment:
Q  261 cacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctac 322  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| ||||||  ||||||||||    
T  9283923 cacatgccagactcttcagctccaaaacaaactcgtggaaaataattcctattatgccctac 9283984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 10372467 - 10372391
Alignment:
Q  49 ccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatcccta 125  Q
    |||||| ||||||||| |||||| |||||||||||||||| || |  |||||||||| || |||||| |||| ||||    
T  10372467 ccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 10372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 10348190 - 10348121
Alignment:
Q  259 tccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 328  Q
    |||||| || |||||||||| ||  ||||||||||| ||||| || |||||||||||||| |||| ||||    
T  10348190 tccacaagtgagactcttcagcttgaaaacaaactcatggaagataattcctgctatgccgtacgatctt 10348121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 26575479 - 26575308
Alignment:
Q  49 ccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatc 148  Q
    ||||||||||||| ||||||||| |||| ||||| |||||||||| ||||||||||| || |||||| | ||||||||||||||  |||||||||||       
T  26575479 ccccaacgaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccct 26575380  T
Q  149 cgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 220  Q
      |||   || ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  26575379 aatcgtggctgcttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatc 26575308  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 37463145 - 37462927
Alignment:
Q  8 gctatctcctatggcccaatcgcttttagggaccctaactgccccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcc 107  Q
    ||||||||| |||||| ||||||||| | | | ||||||  | ||||||||||||||||||||| ||||||||| |||||| |||  ||||||||||| |    
T  37463145 gctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttc 37463046  T
Q  108 tacctcttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaa 207  Q
    | ||| |  || ||||| ||||| | |||||  |||||      |||  || ||||||||||||||| |||||||||||| ||||| |||| ||||||||    
T  37463045 tccctatgcctgtcccttacattatggaatcaaacaaccctaaccgcggctgcttatgcgttcacggcttcggttttgattctttaaccggcgattacaa 37462946  T
Q  208 actcctcagaatcgcttgg 226  Q
    ||||||||||||| |||||    
T  37462945 actcctcagaatctcttgg 37462927  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 37462897 - 37462853
Alignment:
Q  259 tccacatgtcagactcttcaactctaaaacaaactcttggaaaat 303  Q
    ||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  37462897 tccacatgtgagactcttcagctccaaaacaaactcgtggaaaat 37462853  T

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Target: scaffold0667 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 4981 - 4912
Alignment:
Q  157 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 226  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||||||| |||||||| || |||||    
T  4981 ctccttatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttgg 4912  T

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Target: scaffold0667; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 5081 - 5018
Alignment:
Q  51 ccaacgaaatcacaatctggacccctaacacccgtaaatatcgtattatccctttcctacctct 114  Q
    ||||||||||||||||||||| |||||||| ||||||| |||  ||||||||||| || |||||    
T  5081 ccaacgaaatcacaatctggaaccctaacatccgtaaacatcacattatcccttttctccctct 5018  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 41966362 - 41966424
Alignment:
Q  164 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 226  Q
    ||||||||||| |||||||||||||| ||| || | ||| ||||||||||||||||| |||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctcttgg 41966424  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 29467429 - 29467489
Alignment:
Q  164 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttg 225  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||||||| ||||||||| ||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatctcttg 29467489  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 29423759 - 29423703
Alignment:
Q  164 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 220  Q
    |||||| |||| |||||||||||||| ||| | | ||||||||||||||||| ||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatc 29423703  T

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