View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_high_13 (Length: 327)

Name: NF10722_high_13
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_high_13
NF10722_high_13
[»] chr4 (11 HSPs)
chr4 (5-317)||(10484032-10484358)
chr4 (139-315)||(10470294-10470470)
chr4 (1-135)||(10470102-10470250)
chr4 (1-136)||(5203961-5204110)
chr4 (160-315)||(38224323-38224478)
chr4 (139-286)||(5204153-5204300)
chr4 (214-315)||(38945514-38945615)
chr4 (75-128)||(40789097-40789150)
chr4 (148-315)||(51303192-51303359)
chr4 (1-45)||(40789349-40789393)
chr4 (61-125)||(9536637-9536701)
[»] chr2 (4 HSPs)
chr2 (139-283)||(35061121-35061265)
chr2 (4-135)||(35060932-35061077)
chr2 (61-132)||(43111769-43111840)
chr2 (155-211)||(43111903-43111959)
[»] chr1 (1 HSPs)
chr1 (214-289)||(1929131-1929206)
[»] chr7 (1 HSPs)
chr7 (174-210)||(29339599-29339635)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 10484032 - 10484358
Alignment:
Q  5 tctctaagagtgtgagaaaccgttgcattggtttgttgaagcatt------------tggatgagaa--acatagatatggtatctctcaatgggaccat 90  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||            ||||||||||  ||| |||||||||||||||||||||||||||    
T  10484032 tctctaagagtgtgagaaattgttgcattgatttgttgaagcattggttttatctcttggatgagaacaacagagatatggtatctctcaatgggaccat 10484131  T
Q  91 taataaggttgatacaagcaagagaatcagaatagcaagcaagttcacagcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggag 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10484132 taataaggttgatacaagcaagagaatcagaatagcaagcaagttcacagcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggag 10484231  T
Q  191 aagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaactcaattttaataggagtaccatgataactaccatccacattaagaataacat 290  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  || ||| ||||||||||||||| |||||||||||||||||||||||||    
T  10484232 aagcccgcaaggaataaacctgtgtcattacgcaagaccccaccaaactcggttctaacaggagtaccatgatagctaccatccacattaagaataacat 10484331  T
Q  291 ctttaaaattattattgttccatctct 317  Q
    || ||||||||||||||||||||||||    
T  10484332 ctgtaaaattattattgttccatctct 10484358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 315
Target Start/End: Original strand, 10470294 - 10470470
Alignment:
Q  139 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaac 238  Q
    |||| ||||||||||||  ||| ||| || ||||||||||||||||||||||||||||||||| |||||| ||  |||||||| |||||||| |||||||    
T  10470294 agcagaaagctcacctaatagggtgtaatctgaacctggaataaaaccggagaagcccgcaagaaataaatctgcgtcattacacaagacccgaccaaac 10470393  T
Q  239 tcaattttaataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccatct 315  Q
     |  || ||| ||||||||||||| | ||| ||||||||||||||||||||  | ||||||||||||||||||||||    
T  10470394 ccgtttctaacaggagtaccatgagagctatcatccacattaagaataacacttgtaaaattattattgttccatct 10470470  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 10470102 - 10470250
Alignment:
Q  1 cccctctctaagagtgtgagaaaccgttgcattggtttgttgaagcatttg------------gatgagaa--acatagatatggtatctctcaatggga 86  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||            ||||||||  |||||||||||||||||| | ||||||    
T  10470102 cccctctctaagagtgtgagaaaccgttggattggtttgttgaagcatttgttttatctcttggatgagaaccacatagatatggtatctcacgatggga 10470201  T
Q  87 ccattaataaggttgatacaagcaagagaatcagaatagcaagcaagtt 135  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  10470202 ccattaataaggttgacgcaagcaagagaatcagaatagcaagcaagtt 10470250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5203961 - 5204110
Alignment:
Q  1 cccctctctaagagtgtgagaaaccgttgcattggtttgttgaagcatttgg------------atgagaaa--catagatatggtatctctcaatggga 86  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||             |||| ||   ||||||||||| | |||||||||||     
T  5203961 cccctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcatagatatggaacctctcaatgggg 5204060  T
Q  87 ccattaataaggttgatacaagcaagagaatcagaatagcaagcaagttc 136  Q
    ||||  ||||||||||| ||||||||||||||||||||||||| ||||||    
T  5204061 ccatatataaggttgatgcaagcaagagaatcagaatagcaagaaagttc 5204110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 315
Target Start/End: Complemental strand, 38224478 - 38224323
Alignment:
Q  160 gatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaactcaattt-taataggagtacc 258  Q
    |||||||  ||| |||||||| ||||| ||||| ||||||| ||||| ||||  |||||| |||||||| |||||||| |||| || ||||||||||  |    
T  38224478 gatgtcaaatgatcctggaatgaaaccagagaaacccgcaatgaatatacctgagtcattgcgcaagactccaccaaa-tcaagttctaataggagtgtc 38224380  T
Q  259 atgataactaccatccacattaagaataacatctttaaaattattattgttccatct 315  Q
    ||| |||||||||||||||||||||||| || |   || ||||||||| ||||||||    
T  38224379 atgctaactaccatccacattaagaatagcacccgaaatattattattattccatct 38224323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 286
Target Start/End: Original strand, 5204153 - 5204300
Alignment:
Q  139 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaac 238  Q
    |||| |||| |||||||||| |||||||| ||||||||||||  |||  |||||||| | |||||||| ||||   | | |||||||||| |||||||||    
T  5204153 agcagaaagatcacctagcaagatgtcatctgaacctggaatccaactagagaagcctgaaaggaatatacctgcatgagtacgcaagactccaccaaac 5204252  T
Q  239 tcaattttaataggagtaccatgataactaccatccacattaagaata 286  Q
     |  |||| ||||||| ||| ||  |||| ||||||||||||||||||    
T  5204253 ccggttttgataggagaaccgtggcaacttccatccacattaagaata 5204300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 38945615 - 38945514
Alignment:
Q  214 gtcattacgcaagaccccaccaaactcaattttaataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccat 313  Q
    ||||||||||||||| |||||||||||  || ||||| ||||  ||||  ||||||||||||||||||||||| || ||  || ||||||||| ||||||    
T  38945615 gtcattacgcaagactccaccaaactcggttctaatatgagtgtcatggcaactaccatccacattaagaatagcacctgaaatattattattattccat 38945516  T
Q  314 ct 315  Q
    ||    
T  38945515 ct 38945514  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 40789150 - 40789097
Alignment:
Q  75 ctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaa 128  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  40789150 ctctcaatggggccattaataaagttgatgcaagcaagagaatcagaatagcaa 40789097  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 315
Target Start/End: Original strand, 51303192 - 51303359
Alignment:
Q  148 ctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaactcaatttta 247  Q
    ||||||||||| |||||||| ||||||||||||  |||   |||||| |  |||||||| ||||   |||  ||||||||| ||||||||| |  |||||    
T  51303192 ctcacctagcaagatgtcatatgaacctggaatgcaactaaagaagcacaaaaggaatatacctgcatcagcacgcaagactccaccaaacccggtttta 51303291  T
Q  248 ataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccatct 315  Q
    || |||| |||| || |||| |||||||||||||||||| || ||  |||||| ||||  ||||||||    
T  51303292 attggagaaccaagacaacttccatccacattaagaatagcacctgaaaaattgttatctttccatct 51303359  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40789393 - 40789349
Alignment:
Q  1 cccctctctaagagtgtgagaaaccgttgcattggtttgttgaag 45  Q
    |||||||||||||||| |||||||||||  |||||||||||||||    
T  40789393 cccctctctaagagtgcgagaaaccgttagattggtttgttgaag 40789349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 9536701 - 9536637
Alignment:
Q  61 catagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatag 125  Q
    |||| |||||||| || |||||||| ||||||||||| |  || ||| |||||||||||||||||    
T  9536701 catatatatggtacctttcaatggggccattaataagataaatgcaaacaagagaatcagaatag 9536637  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 35061121 - 35061265
Alignment:
Q  139 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaac 238  Q
    |||| ||||||||||||||||||| ||||  ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35061121 agcagaaagctcacctagcaggatatcatccgaacctggaataaaatcggagaagcctgcaaggaataaacctgtgtcattacgcaagaccccaccaaac 35061220  T
Q  239 tcaattttaataggagtaccatgataactaccatccacattaaga 283  Q
     |  || ||| ||||||||||||| | ||||||||||| ||||||    
T  35061221 ccggttctaacaggagtaccatgacagctaccatccacgttaaga 35061265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 35060932 - 35061077
Alignment:
Q  4 ctctctaagagtgtgagaaaccgttgcattggtttgttgaagcatttg------------gatgagaaacat--agatatggtatctctcaatgggacca 89  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||            ||||||||  ||  |||||||||| || ||||||||||||    
T  35060932 ctctctaagagtgtgagaaactgttacattggtttgttgaagcatttgttttatgtcttggatgagaacaatgtagatatggtacctttcaatgggacca 35061031  T
Q  90 ttaataaggttgatacaagcaagagaatcagaatagcaagcaagtt 135  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  35061032 ttaataaggttgatgcaagcaagagaatcagaatagcaagcaagtt 35061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 43111769 - 43111840
Alignment:
Q  61 catagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaagcaa 132  Q
    |||| |||||||| ||||||||||   |||||||||| || || ||| ||||||||||| ||||||||||||    
T  43111769 catatatatggtacctctcaatggagtcattaataagattaatgcaaacaagagaatcacaatagcaagcaa 43111840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 43111903 - 43111959
Alignment:
Q  155 agcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacct 211  Q
    |||| |||||||| ||| |||||||||||||  |||||| || ||||||||||||||    
T  43111903 agcaagatgtcatatgagcctggaataaaactagagaagtccacaaggaataaacct 43111959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 1929131 - 1929206
Alignment:
Q  214 gtcattacgcaagaccccaccaaactcaattttaataggagtaccatgataactaccatccacattaagaataaca 289  Q
    ||||||||||||||| |||||| || || || |||||||||| |||    ||||||||||||||||||||| ||||    
T  1929131 gtcattacgcaagactccaccagacccagttctaataggagtgccaacgcaactaccatccacattaagaacaaca 1929206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 29339635 - 29339599
Alignment:
Q  174 ctggaataaaaccggagaagcccgcaaggaataaacc 210  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29339635 ctggaataaaaccatagaagcccgcaaggaataaacc 29339599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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