View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_15 (Length: 306)
Name: NF10722_high_15
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 3067277 - 3067554
Alignment:
| Q |
19 |
gtaaaagattcaattttcattttgaagttggcatctgnnnnnnnttagagaataaataactattaattatttatatagtcaagttgttgataacatgtga |
118 |
Q |
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| T |
3067277 |
gtaaaagattcaattttcattttgaagttggcatctgaaaaaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtga |
3067376 |
T |
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| Q |
119 |
aattgaacatcaaggatatatcaaatatcaatgtgccagaatataaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaa |
218 |
Q |
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| T |
3067377 |
aattgaacatcaaggatatatcaaatatcaatgtgccagaatataaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaa |
3067476 |
T |
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| Q |
219 |
taaaaggctttagatgcgtataatcgttttgatgccaataagtgccattcaaaatcttagagtagtacagatcctttg |
296 |
Q |
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| T |
3067477 |
taaaaggctttagatgcgtataatcgttttgatgccaataagtgccattcaaaatcttagagtagtacagatcctttg |
3067554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 3052619 - 3052679
Alignment:
| Q |
63 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
125 |
Q |
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| T |
3052619 |
ttagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
63 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
120 |
Q |
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| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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