View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_17 (Length: 300)
Name: NF10722_high_17
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 45531303 - 45531029
Alignment:
| Q |
19 |
aattataattaaagaaatactaaagaatgccttgaggatattgtttatgagtcatgatccggttatatcatgtgtaagtcataaaactagcaacaaatca |
118 |
Q |
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| T |
45531303 |
aattataattaaagaaatactaaagaatgccttgaggatattgtttatgagtcatgatccggttatatcatgtgtaagtcataagactagcaacaaatca |
45531204 |
T |
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| Q |
119 |
tagttgtgaaatccatggaatcaagtgactcataatatcacacttgtccaataaaataaacctcaaagtgaggcacgtgcaatatgtcttctctcccctc |
218 |
Q |
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| T |
45531203 |
tagttgtgaaatccatggaatcaagtgactcataatatcacacttgtccaataaaataaacctcaaagtgaggcacgtgcaatatgtcttctctcccctc |
45531104 |
T |
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| Q |
219 |
ttgttttgacgtcaacaacacctattttgtcaaagtgtagat---gtaaggttgaatttaagctcaagatctctg |
290 |
Q |
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| T |
45531103 |
tagttttgacgtcaacaacacctattttgtaaaagtgtagatcaagtaaggttgaatttgagctcaagatctctg |
45531029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 45525237 - 45525158
Alignment:
| Q |
91 |
tgtaagtcataaaactagcaacaaatcatagttgtgaaatccatggaatcaagtgactcataatatcacacttgtccaat |
170 |
Q |
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| T |
45525237 |
tgtaagtcataagacttgcaccaaatcttatttgtgaattccaatgattcaagtgactcataatttcactctagtccaat |
45525158 |
T |
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