View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_23 (Length: 274)
Name: NF10722_high_23
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_23 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 5070 - 4821
Alignment:
| Q |
15 |
aatttttgctctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaag |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5070 |
aatttttgctctatctatttctatatcatatcatatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaag |
4971 |
T |
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| Q |
115 |
tagtcttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaact |
214 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970 |
tagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaact |
4871 |
T |
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| Q |
215 |
taagtagactatttcctaacaacttaaagtaaaaatctcttcctcctatg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4870 |
taagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatg |
4821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 2634939 - 2635188
Alignment:
| Q |
15 |
aatttttgctctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaag |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2634939 |
aatttttgctctatctatttctatatcatatcatatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaag |
2635038 |
T |
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| Q |
115 |
tagtcttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaact |
214 |
Q |
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| T |
2635039 |
tagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaact |
2635138 |
T |
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| Q |
215 |
taagtagactatttcctaacaacttaaagtaaaaatctcttcctcctatg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2635139 |
taagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatg |
2635188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 2592975 - 2593215
Alignment:
| Q |
19 |
tttgctctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagt |
118 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592975 |
tttggtctatctatctctatatc------tatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagt |
2593068 |
T |
|
| Q |
119 |
cttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaactt-aa |
217 |
Q |
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|||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |
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| T |
2593069 |
cttgtttaacctcttatttaaaaattgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattccctagcgatgtagaaaacttgaa |
2593168 |
T |
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| Q |
218 |
gtagactatttcctaacaacttaaagtaaaaatctcttcctcctatg |
264 |
Q |
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||||| ||||||||||||||| | |||||||| |||| |||||||| |
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| T |
2593169 |
gtagaacatttcctaacaacttgatgtaaaaatttcttactcctatg |
2593215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 2624515 - 2624619
Alignment:
| Q |
37 |
atatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatt |
136 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624515 |
atatcatatcatatatgaataaaaccatgactcccacctaaaaaaaaagtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatt |
2624614 |
T |
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| Q |
137 |
tgaaa |
141 |
Q |
| |
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||||| |
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| T |
2624615 |
tgaaa |
2624619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 264
Target Start/End: Complemental strand, 2568238 - 2568077
Alignment:
| Q |
105 |
cttattgaagtagtcttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat |
204 |
Q |
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|||||||||||||||| ||| ||||||||||||| | ||| |||||||||||||||||| ||||||||| |||||||||| ||||| ||||| || ||| |
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| T |
2568238 |
cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaatgtcgattttgattaaatgcatatgcacttgtttaccaatggat |
2568139 |
T |
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| Q |
205 |
gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatctcttcctcctatg |
264 |
Q |
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|||||| ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||| |
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| T |
2568138 |
gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg |
2568077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 2671663 - 2671592
Alignment:
| Q |
42 |
atatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaa |
113 |
Q |
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|||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
2671663 |
atatcatatatggttaaaattgtggctcctaccttgaaaataaggggagttagggagatgacacttattgaa |
2671592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 2568324 - 2568258
Alignment:
| Q |
42 |
atatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacactta |
108 |
Q |
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||||||||||||| ||||| | |||||| ||||| || ||||| |||||||||||||||||||||| |
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| T |
2568324 |
atatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
2568258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 2640572 - 2640528
Alignment:
| Q |
106 |
ttattgaagtagtcttgttcaacctcttatttgaaagttgcatta |
150 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
2640572 |
ttattgaagaagtcttgttctacctcttatttgaaaattgcatta |
2640528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 2595706 - 2595662
Alignment:
| Q |
106 |
ttattgaagtagtcttgttcaacctcttatttgaaagttgcatta |
150 |
Q |
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||||||||| |||||||||| ||||||||||||||| ||| |||| |
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| T |
2595706 |
ttattgaagaagtcttgttctacctcttatttgaaaattgtatta |
2595662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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