View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_28 (Length: 253)
Name: NF10722_high_28
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_28 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 44312137 - 44312368
Alignment:
| Q |
9 |
agcagagataggatcaactgttaaaaatgcagaacacaacnnnnnnnnngagagtaactactaactaatcagagatcaataattaagcaacaaattcacc |
108 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44312137 |
agcagagataggatcaactgttaaa--tgcagaacacaacaaaaaaaatgag--taactactaactaatcagagatcaataattaagcaacaaattcacc |
44312232 |
T |
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| Q |
109 |
atnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcac |
208 |
Q |
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| T |
44312233 |
ataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcac |
44312332 |
T |
|
| Q |
209 |
accatttgaaaatttctctccagaaacttttgagac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44312333 |
accatttgaaaatttctctccagaaacttttgagac |
44312368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 252
Target Start/End: Original strand, 44301285 - 44301481
Alignment:
| Q |
60 |
gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc |
159 |
Q |
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| T |
44301285 |
gagtaactactaactaatcagagatcaataattaagcagcagatttaccataaaaaa-taagttataaataagcaacaaaacatagcaaagctaacaagc |
44301383 |
T |
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| Q |
160 |
caaaccaactggcgaagtaggatcaattctc-----ttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaag |
252 |
Q |
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| T |
44301384 |
caaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataag |
44301481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 43896006 - 43896126
Alignment:
| Q |
123 |
tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatt |
222 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||| ||| || |||||||||||| ||||||||||||||||| |
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| T |
43896006 |
tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaatt |
43896105 |
T |
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| Q |
223 |
tctctccagaaacttttgaga |
243 |
Q |
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||||||||||| ||| ||||| |
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| T |
43896106 |
tctctccagaatcttatgaga |
43896126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 44306459 - 44306581
Alignment:
| Q |
123 |
tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttg-aaaat |
221 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |
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| T |
44306459 |
tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaaaa |
44306558 |
T |
|
| Q |
222 |
ttctctccagaaacttttgagac |
244 |
Q |
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||||||||||| ||| |||||| |
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| T |
44306559 |
ctctctccagaatcttatgagac |
44306581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 43895902 - 43895946
Alignment:
| Q |
61 |
agtaactactaactaatcagagatcaataattaagcaacaaattc |
105 |
Q |
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| T |
43895902 |
agtaactactaaataatcagagatcaataattaagcaacaaattc |
43895946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 44306353 - 44306397
Alignment:
| Q |
61 |
agtaactactaactaatcagagatcaataattaagcaacaaattc |
105 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44306353 |
agtaactactaaataatcagagatcaataattaagcaacaaattc |
44306397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 4084057 - 4084248
Alignment:
| Q |
60 |
gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc |
159 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| |
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| T |
4084057 |
gagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaa-taagttataaataagcaacaaaccatagtaaagctaacaagc |
4084155 |
T |
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| Q |
160 |
caaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaagc |
253 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| |
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| T |
4084156 |
caaaccaactggt-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagc |
4084248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 8159311 - 8159244
Alignment:
| Q |
186 |
ttctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagaccgattaagc |
253 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
8159311 |
ttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagc |
8159244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 18701618 - 18701740
Alignment:
| Q |
134 |
aacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaat---tctcttgaatgaatccattcacaccatttgaaaatttctctcca |
230 |
Q |
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||||||||| |||||| ||| || |||||||||| || ||||||||||| | ||||| ||||||||| ||||||||||||||||||| | | || |
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| T |
18701618 |
aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccg |
18701717 |
T |
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| Q |
231 |
gaaacttttgagaccgattaagc |
253 |
Q |
| |
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||| ||||||||||||| ||||| |
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| T |
18701718 |
gaatcttttgagaccgaataagc |
18701740 |
T |
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