View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_29 (Length: 250)
Name: NF10722_high_29
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 18035345 - 18035572
Alignment:
| Q |
13 |
taaaacagatggagtatctatagcaacgctctttttgcagtcactaaaagcgtttgttgctatatggctaatttcttgtagcgaacgataagctctttac |
112 |
Q |
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| T |
18035345 |
taaaacggatggagtatctatagcaacgctttttttgcagtcactaaaagcgtttgttgctatatggctaatttcttgtagtgaacgataagctctttac |
18035444 |
T |
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| Q |
113 |
gagcggcattttcttaaagttcctattaaactatgacttaccaagggttcgacttaattcatcacaaaacttgaagtttcatgcaaaatacaagttctat |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18035445 |
gagcagcattttcttaaagttcctattaaactatgacttaccaagggttcaacttaattcatcacaaaacttgaagtttcatgcaaaatacaagttctat |
18035544 |
T |
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| Q |
213 |
atgagcattacgctctcccggacctttg |
240 |
Q |
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| T |
18035545 |
acgagcattacgctctcccggacctttg |
18035572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 18021118 - 18021342
Alignment:
| Q |
15 |
aaacagatggagtatctatagcaacgctctttttgcagtcactaaaagcgtttgttgctatatggctaatttcttgtagcgaacgataagctctttacga |
114 |
Q |
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|||| ||||||||||||||||||||||| ||||| || |||||| | || | | |||||||||| |||||| ||||| |||||||||||| ||||| | |
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| T |
18021118 |
aaacggatggagtatctatagcaacgct-tttttacaatcactagaggcttctcttgctatatgaaaaatttcatgtagtgaacgataagctttttacaa |
18021216 |
T |
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| Q |
115 |
gcggcattttcttaaagttcctattaaactatgacttaccaagggttcgacttaattcatcacaaaacttgaagtttcatgcaaaatacaagttctatat |
214 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
18021217 |
gcggcattttcttaaagttcctatcaaactacgacttaccaagggttcgatttaattcatcacaaaacttaatgtttcatgcaaactacaagttctatac |
18021316 |
T |
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| Q |
215 |
gagcattacgctctcccggacctttg |
240 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
18021317 |
gagcattacgctctcccgtacctttg |
18021342 |
T |
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Back To:
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