View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10722_high_33 (Length: 247)
Name: NF10722_high_33
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_33 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52983059 - 52982832
Alignment:
| Q |
1 |
ttgtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52983059 |
ttgtaacacgagagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatt |
52982960 |
T |
|
| Q |
101 |
tatgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
52982959 |
tatgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtcgacaagaccgtgatctgaaacata |
52982860 |
T |
|
| Q |
201 |
agatcgtacgcttatacagtctagccaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
52982859 |
agatcgtacgcttatacagtctagccaa |
52982832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 55619182 - 55619005
Alignment:
| Q |
1 |
ttgtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
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|
| T |
55619182 |
ttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatt |
55619084 |
T |
|
| Q |
101 |
tatgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagac |
179 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
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|
| T |
55619083 |
tatgagaaggctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagac |
55619005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 55626486 - 55626309
Alignment:
| Q |
1 |
ttgtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
55626486 |
ttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatt |
55626388 |
T |
|
| Q |
101 |
tatgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagac |
179 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
55626387 |
tatgagaaggctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagac |
55626309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 55657532 - 55657369
Alignment:
| Q |
1 |
ttgtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
55657532 |
ttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaacttgcagagtcatgacaacaatgaaatt |
55657433 |
T |
|
| Q |
101 |
tatgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctc |
164 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55657432 |
tatgagaaggctgttaaaattcttgagacatattggttggaagatgttgatgagacactacctc |
55657369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 54860956 - 54860799
Alignment:
| Q |
3 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaattta |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||| |
|
|
| T |
54860956 |
gtaacacgggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacatgcagaatcatgacaactatgaaattta |
54860857 |
T |
|
| Q |
103 |
tgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacacta |
160 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54860856 |
tgagaaggctgttaaaattcttgagacatattggttggaagatgaagacgagacacta |
54860799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 3671224 - 3671055
Alignment:
| Q |
6 |
acacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatga |
105 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3671224 |
acacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaaagattggaaacttgcagagtcatgacaactatgaaatttatga |
3671125 |
T |
|
| Q |
106 |
gaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt |
175 |
Q |
| |
|
||| ||||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||| || ||||| |
|
|
| T |
3671124 |
gaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt |
3671055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 54630362 - 54630519
Alignment:
| Q |
3 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaattta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||| ||| |||||||| |
|
|
| T |
54630362 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaacttggatagtcatgaagacagagaaattta |
54630461 |
T |
|
| Q |
103 |
tgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacacta |
160 |
Q |
| |
|
|||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54630462 |
tgagaaggctgctaaaattctcgagagatattggttggaagatgaagatgagacacta |
54630519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 55663763 - 55663621
Alignment:
| Q |
1 |
ttgtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatt |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
55663763 |
ttgtaacaccggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaacttgcagagtcacaaccacattgaaatt |
55663664 |
T |
|
| Q |
101 |
tatgagaatgctgttagaattctcgagacatattggttggaag |
143 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
55663663 |
tatgagaaggctgttagaatcgtcgagacatattggttggaag |
55663621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 55637260 - 55637423
Alignment:
| Q |
5 |
aacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatg |
104 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| || ||||| || | || | |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
55637260 |
aacacgggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaacttgcagagtcatgacaacaatgaaattcgtg |
55637359 |
T |
|
| Q |
105 |
agaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaag |
168 |
Q |
| |
|
|||| ||||||| |||||| || ||||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
55637360 |
agaaggctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacctccaag |
55637423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 50190157 - 50190005
Alignment:
| Q |
3 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaattta |
102 |
Q |
| |
|
||||||| | ||||| ||| |||||| |||||||||||| | | |||||||||| || ||||| |||||| |||| |||||||| ||| | ||||| || |
|
|
| T |
50190157 |
gtaacactgaagatgacaacttgtattttcagatgatagatgtttctgagggatttgacaagatagaaaacctgcaaagtcatgataaccaagaaatata |
50190058 |
T |
|
| Q |
103 |
tgagaatgctgttagaattctcgagacatattggttggaagatgaagatgaga |
155 |
Q |
| |
|
|||||| ||||||| |||||| || |||||||||| | | ||||||||||||| |
|
|
| T |
50190057 |
tgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagatgaga |
50190005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 54630254 - 54630314
Alignment:
| Q |
3 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaa |
63 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
54630254 |
gtaacaccggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa |
54630314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 13403665 - 13403837
Alignment:
| Q |
3 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaattta |
102 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
13403665 |
gtaacgcgggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacctgcagagtcatgacaacaatgaaattta |
13403764 |
T |
|
| Q |
103 |
tgagaatgctgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt |
175 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
13403765 |
cgagaaggctgttaaaattctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggt |
13403837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 9891559 - 9891709
Alignment:
| Q |
6 |
acacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatga |
105 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9891559 |
acacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaacttgcagagtcatgacaactatgaaatttatgg |
9891658 |
T |
|
| Q |
106 |
gaatgctgttagaattctcgagacatattggttggaagatgaagatgagac |
156 |
Q |
| |
|
||| ||||| | |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
9891659 |
gaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagac |
9891709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 17220191 - 17220279
Alignment:
| Q |
3 |
gtaacacgggagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaac |
91 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
17220191 |
gtaacacgggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattgataacatgcagaatcatgacaac |
17220279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 37308724 - 37308594
Alignment:
| Q |
26 |
tatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgctgttagaattctcg |
125 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||| || ||||| ||| | |||||||||||||||| || |||||||| || ||||| | ||||| | |
|
|
| T |
37308724 |
tatgcccagatgattgatgatgctgaggggttggagaaaattgagaacctccagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttg |
37308625 |
T |
|
| Q |
126 |
agacatattggttggaagatgaagatgagac |
156 |
Q |
| |
|
||||||| |||||||| || ||||||||||| |
|
|
| T |
37308624 |
agacatactggttggaggaagaagatgagac |
37308594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 46153317 - 46153210
Alignment:
| Q |
47 |
gctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgctgttagaattctcgagacatattggttggaagatg |
146 |
Q |
| |
|
|||||||| ||||| || ||||| ||| | |||||||||||||||||||| |||||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
46153317 |
gctgagggtttggagaaaattgagaacctccagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttggaggaag |
46153218 |
T |
|
| Q |
147 |
aagatgag |
154 |
Q |
| |
|
| |||||| |
|
|
| T |
46153217 |
acgatgag |
46153210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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