View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_high_35 (Length: 241)

Name: NF10722_high_35
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_high_35
NF10722_high_35
[»] chr2 (9 HSPs)
chr2 (19-241)||(9329222-9329444)
chr2 (28-213)||(9283487-9283669)
chr2 (19-235)||(9275150-9275368)
chr2 (19-241)||(9316651-9316870)
chr2 (124-234)||(9321606-9321722)
chr2 (183-241)||(7115101-7115159)
chr2 (82-158)||(10348509-10348585)
chr2 (167-241)||(9357803-9357880)
chr2 (19-57)||(9060402-9060440)
[»] chr3 (1 HSPs)
chr3 (171-241)||(37463121-37463191)
[»] chr4 (1 HSPs)
chr4 (19-71)||(561966-562015)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 9329444 - 9329222
Alignment:
Q  19 aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329444 aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaacca 9329345  T
Q  119 aatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9329344 aatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatgggtcttatcggttcatgcaacggcctcattgc 9329245  T
Q  219 tatctcctatggccaaatcgctt 241  Q
    |||||||||||||||||||||||    
T  9329244 tatctcctatggccaaatcgctt 9329222  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 9283487 - 9283669
Alignment:
Q  28 aaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatga 127  Q
    |||||||||||||||| |   |||||||| ||||| |||||||| |  | ||| ||| ||||||||||||||||| | ||||| |||||||||||||| |    
T  9283487 aaccttcacctcaaaagt---tccctcaacttcaaactcatcctccgtcacaagaccaatctctaccaactcgatttccctaacctaaccaaatccataa 9283583  T
Q  128 ttccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctc 213  Q
    | || |||||||||||||||| ||||||||| | |||| |||||| |||||||| || ||||||||| |||||||| |||||||||    
T  9283584 taccgctcaaccatcctttcaccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctc 9283669  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 9275368 - 9275150
Alignment:
Q  19 aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgat-ctctaccaactcgatcttcctaatctaacc 117  Q
    |||||||  |||||||| |||||||||   |||||||||||||||||||| ||||| | ||| ||| |  |||||| ||||| || | ||||| ||||||    
T  9275368 aacttcatcaaccttcatctcaaaaat---tccctcaatttcaacctcattcttcaacacaacacccaaactctacgaactcaatttccctaacctaacc 9275272  T
Q  118 aaatccatgattccactcaaccatcctttcagcaccaa----cattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctc 213  Q
    |||| ||| || | |||||||||||||||||| | |||    || || | || ||||||||||||||| |||||||||||| |||||||| |||||||||    
T  9275271 aaattcataatacaactcaaccatcctttcagtagcaagcaacaatgattctttcacgcgtaacagcaccatggctcttataggttcatgtaacggcctc 9275172  T
Q  214 attgctatctcctatggccaaa 235  Q
    |||||||||||| |||||||||    
T  9275171 attgctatctccaatggccaaa 9275150  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 9316870 - 9316651
Alignment:
Q  19 aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatccttcagctcaataccgatctctaccaactcgatctt---cctaatctaa 115  Q
    |||||||  ||||||||||||||||||||||||||||||     | | ||||||||   |||  |||| ||||||||| |||||  |   ||| | ||||    
T  9316870 aacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaactctaccaaatcgatgatttccctgacctaa 9316771  T
Q  116 ccaaatccatgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaacagcaacatggctcttatcggttcatgcaacggcctcat 215  Q
    | |||||||||||||||||||||||||||||      |||||  ||||||||||||  ||||||||  ||||||||| |||||||||| ||||||||  |    
T  9316770 cgaaatccatgattccactcaaccatccttt------caacacagctcctgtcacgtataacagcataatggctcttctcggttcatgtaacggccttct 9316677  T
Q  216 tgctatctcctatggccaaatcgctt 241  Q
     || || ||| |||| ||||||||||    
T  9316676 cgccatttccaatggtcaaatcgctt 9316651  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 9321722 - 9321606
Alignment:
Q  124 atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa------cagcaacatggctcttatcggttcatgcaacggcctcattg 217  Q
    ||||||||||||||||||||||||| |||||| ||  |||||||||| |||||      ||| | |||||||||||||||||| || ||||||||| | |    
T  9321722 atgattccactcaaccatcctttcaccaccaaaatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcg 9321623  T
Q  218 ctatctcctatggccaa 234  Q
    | |||||| | ||||||    
T  9321622 ccatctcccacggccaa 9321606  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 7115101 - 7115159
Alignment:
Q  183 catggctcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgctt 241  Q
    ||||| ||||||||||||||| ||||||||| | || |||||| |||||||||||||||    
T  7115101 catggatcttatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgctt 7115159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 10348585 - 10348509
Alignment:
Q  82 accgatctctaccaactcgatcttcctaatctaaccaaatccatgattccactcaaccatcctttcagcaccaacat 158  Q
    |||||| ||||||||||| || | ||||| ||||||||||| || |||||||||||| |||| ||||  ||||||||    
T  10348585 accgatttctaccaactccatttccctaacctaaccaaatctatcattccactcaactatcccttcactaccaacat 10348509  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 9357880 - 9357803
Alignment:
Q  167 tcacgcgtaacagca---acatggctcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgctt 241  Q
    |||||||||||||||   ||||  |||||||||||||||| ||||||||| | || |||||| ||||| |||||||||    
T  9357880 tcacgcgtaacagcaccaacatttctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctt 9357803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 9060402 - 9060440
Alignment:
Q  19 aacttcactaaccttcacctcaaaaataattccctcaat 57  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  9060402 aacttcactaacctttacctcaaaaataatcccctcaat 9060440  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 37463191 - 37463121
Alignment:
Q  171 gcgtaacagcaacatggctcttatcggttcatgcaacggcctcattgctatctcctatggccaaatcgctt 241  Q
    |||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  37463191 gcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctt 37463121  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 562015 - 561966
Alignment:
Q  19 aacttcactaaccttcacctcaaaaataattccctcaatttcaacctcatcct 71  Q
    ||||||||||||||||||||||||   || ||||||||||| |||||||||||    
T  562015 aacttcactaaccttcacctcaaa---aactccctcaattttaacctcatcct 561966  T

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