View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10722_high_36 (Length: 241)
Name: NF10722_high_36
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9232228 - 9232450
Alignment:
| Q |
1 |
taataatgttctttttggcgaagacaattttggatctgaaccgttcattctggatccaataaatccattgagaatagcgtatttcaattgttcaagtcca |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9232228 |
taataatgttctttttggagaagacaattttggatctgaaccgttcattctggatccaataaatccattgagaatagcgtatttcaattgttcaagtcca |
9232327 |
T |
|
| Q |
101 |
ataaaagatccacggtacgttaaggtggacacgagtcgttgtagcagacatgggaatagtagtactaatcatgtgtatgctgttttggaaccatcattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9232328 |
ataaaagatccacggtacgttaaggtggacacgagtcgttgtagcagacatgggaatagtagtactaatcatgtgtattctgttttggaaccatcattgt |
9232427 |
T |
|
| Q |
201 |
ttgagtatcgtgttgaggatatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9232428 |
ttgagtatcgtgttgaggatatt |
9232450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 9386340 - 9386218
Alignment:
| Q |
75 |
tagcgtatttcaattgttcaagtccaataaaagatccacggtacgttaaggtggacacgagtcgttgtagcagacatgggaatagtagtactaatcatgt |
174 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||| ||| ||||| ||||||| ||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
9386340 |
tagcgtatttcaattgttctaatccaattaaagatcatatgtatgttaacgtggacatgagctgttgtaacatacatgggaatagtagtactaatcatgt |
9386241 |
T |
|
| Q |
175 |
gtatgctgttttggaaccatcat |
197 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
9386240 |
atatgcagttttggaacaatcat |
9386218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University