View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_high_38 (Length: 240)

Name: NF10722_high_38
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_high_38
NF10722_high_38
[»] chr8 (6 HSPs)
chr8 (1-224)||(44312388-44312611)
chr8 (1-218)||(43896155-43896372)
chr8 (1-224)||(44306609-44306832)
chr8 (1-219)||(44301501-44301719)
chr8 (7-43)||(43895632-43895668)
chr8 (7-43)||(44306056-44306092)
[»] chr3 (1 HSPs)
chr3 (1-220)||(4084267-4084492)
[»] chr4 (1 HSPs)
chr4 (1-220)||(18701759-18701982)
[»] chr6 (2 HSPs)
chr6 (1-220)||(8158982-8159222)
chr6 (112-177)||(409886-409951)
[»] chr5 (1 HSPs)
chr5 (60-220)||(35856724-35856884)
[»] chr2 (2 HSPs)
chr2 (152-208)||(10541388-10541444)
chr2 (152-208)||(10846409-10846465)
[»] chr7 (1 HSPs)
chr7 (1-39)||(15040310-15040348)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44312388 - 44312611
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44312388 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatgagcttcatcaacttcc 44312487  T
Q  101 ttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgat 200  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44312488 ttaatcttaccataatgtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttcttaataacaccctgat 44312587  T
Q  201 agattcttagataagttaataagt 224  Q
    ||||||||||||||||||||||||    
T  44312588 agattcttagataagttaataagt 44312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43896155 - 43896372
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttcc 100  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| | || |||| || ||| |||||||||||||||||||||||||||    
T  43896155 cattgtatatctaacagacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagcatgagcttcatcaacttcc 43896254  T
Q  101 ttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgat 200  Q
    | |||| |||||| ||||||||||  ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43896255 tcaatcttatcatcatgtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgat 43896354  T
Q  201 agattcttagataagtta 218  Q
    ||||||||||||||||||    
T  43896355 agattcttagataagtta 43896372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44306609 - 44306832
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttcc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||| |||| | || |  | |||||||||||||||||||||||||||||| | |    
T  44306609 cattgtatatctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcatcaacatac 44306708  T
Q  101 ttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgat 200  Q
    | ||||  ||||| ||||||||||| |||   | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44306709 tcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgat 44306808  T
Q  201 agattcttagataagttaataagt 224  Q
    ||||||||||||||||||||||||    
T  44306809 agattcttagataagttaataagt 44306832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44301501 - 44301719
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaacttcc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||| |  | | || |||| |||||||||||| |||||||||||||||||   |    
T  44301501 cattgtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccggcatgagcttcatcaacaaac 44301600  T
Q  101 ttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgat 200  Q
    | ||||| ||||| ||||||||||  ||| | |  ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44301601 tcaatcacatcatcatgtctcttagacaagctataaatctgaatcttctcaccagtgttaacatttgtaataaaatcacccttcttgataacaccctgat 44301700  T
Q  201 agattcttagataagttaa 219  Q
    ||||||||||| |||||||    
T  44301701 agattcttagacaagttaa 44301719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 43895632 - 43895668
Alignment:
Q  7 atatctaacagacccatcagtaaaagtatctccagat 43  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43895632 atatctaacagacccatcagcaaaagtatctccagat 43895668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 44306056 - 44306092
Alignment:
Q  7 atatctaacagacccatcagtaaaagtatctccagat 43  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  44306056 atatctaacggacccatcagcaaaagtatctccagat 44306092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4084267 - 4084492
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaat------acaaaaacaatttctccagcatgagcttcatca 94  Q
    |||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||       |||| ||||| ||||||||||||||||||||||    
T  4084267 cattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcatca 4084366  T
Q  95 acttccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacac 194  Q
    ||| |||||||| ||| || ||||||||||  ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  4084367 actgccttaatcgtattatcatgtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgtaataaaatcacccttcttgataacac 4084466  T
Q  195 cctgatagattcttagataagttaat 220  Q
    ||||||||||||||||||||||||||    
T  4084467 cctgatagattcttagataagttaat 4084492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18701759 - 18701982
Alignment:
Q  1 cattatatatctaacagacccat---cagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttcatcaact 97  Q
    |||| ||||||||||||||||||   | ||||||||||||||||||  ||||  |||| |||| ||||||||||||||||||||||||||||||||||||    
T  18701759 cattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctccagcatgagcttcatcaact 18701858  T
Q  98 tccttaatcatatcataat-gtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcacccttcttaataacaccc 196  Q
    ||||  ||  ||| |   | ||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18701859 tcctcgattttattaacttcgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccc 18701958  T
Q  197 tgatagattcttagataagttaat 220  Q
    ||||||||||||||||||||||||    
T  18701959 tgatagattcttagataagttaat 18701982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8159222 - 8158982
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaatacaaaaacaatttctccagcatgagcttc---------- 90  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||||  |||| |||| |||||||||||||||||||||||||||||              
T  8159222 cattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcc 8159123  T
Q  91 --------atcaacttccttaatcatatcataat---gtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatcac 179  Q
            ||||||||||| | ||  |||||  |   ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  8159122 ttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaataaaatcac 8159023  T
Q  180 ccttcttaataacaccctgatagattcttagataagttaat 220  Q
    |||||||||||||||||||||| |||||||| |||||||||    
T  8159022 ccttcttaataacaccctgataaattcttaggtaagttaat 8158982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 409886 - 409951
Alignment:
Q  112 ataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgttaacatttgtaataaaatc 177  Q
    |||| ||||||||  || || ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  409886 ataacgtctcttaaacatacgaggaaccttaatcttcttaccagtgttaacattagtaataaaatc 409951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 35856884 - 35856724
Alignment:
Q  60 atacaaaaacaatttctccagcatgagcttcatcaacttccttaatcatatcataatgtctcttacccaaacaaggaatcttaatcttctcaccagtgtt 159  Q
    |||||| |||||||| |||||||||||| |||| |||||| | |||   |||| ||  |||||||  ||||  |  || |||||||||||||||||||||    
T  35856884 atacaacaacaatttgtccagcatgagcctcattaacttcatcaataccatcacaacttctcttaaacaaatgattaaccttaatcttctcaccagtgtt 35856785  T
Q  160 aacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaat 220  Q
    |||||| ||||||||||| || ||  ||||||| |||||||||||||||||||| ||||||    
T  35856784 aacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat 35856724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
Q  152 ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattctt 208  Q
    ||||||||| |||||||||||||||| ||||||  ||| ||||||| ||||||||||    
T  10541388 ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt 10541444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 10846409 - 10846465
Alignment:
Q  152 ccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattctt 208  Q
    ||||||||||| |||||||||||||| ||||||  ||| ||||||| ||| ||||||    
T  10846409 ccagtgttaacgtttgtaataaaatcccccttccgaatgacaccctcatatattctt 10846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15040310 - 15040348
Alignment:
Q  1 cattatatatctaacagacccatcagtaaaagtatctcc 39  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  15040310 cattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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