View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_42 (Length: 239)
Name: NF10722_high_42
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6206926 - 6207147
Alignment:
| Q |
1 |
tccatatgcttataccacttgatattaactgatttatagttggtagaatactagttggactatccgtccaacccacaccactgaaaaagagcattagaca |
100 |
Q |
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| T |
6206926 |
tccatatgcttataccacttgatattaactgatttatagttggtagaatactagttggactatctgtccaacccacaccactgaaaaagagcattagaca |
6207025 |
T |
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| Q |
101 |
ttgattcatagaaatactatagcatttacaattaatgcattttgaaattgtgggaaaataaaacacaattacaacttattttagtgtgtacctgcaatga |
200 |
Q |
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| T |
6207026 |
ttgattcatagaaatactatagcatttacaattaatgcattttgaaattgtgggaaaataaaacacaattacaacttattttagtgtgtacctgcaatga |
6207125 |
T |
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| Q |
201 |
gaccattttatgggtttaacat |
222 |
Q |
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| T |
6207126 |
gaccattttatgggtttaacat |
6207147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 6177114 - 6177271
Alignment:
| Q |
1 |
tccatatgcttataccacttgatattaactgatttatagttggtagaatactagttggactatccgtccaacccacaccactgaaaaagagcattag--a |
98 |
Q |
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| T |
6177114 |
tccatatgcttataccacttgatattaatccatttatagttggtagaatacttgctggactatctgtccaactcagatcactgaaaaagaccattagaca |
6177213 |
T |
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| Q |
99 |
cattgattcatagaaatactatagcatttacaattaatgcattttgaaattgtgggaaa |
157 |
Q |
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| T |
6177214 |
cattgattca-ggaaatagtacaacatttactgtaaatgcattttgaaattgtaggaaa |
6177271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6214622 - 6214721
Alignment:
| Q |
1 |
tccatatgcttataccacttgatattaactgatttatagttggtagaatactagttggactatccgtccaacccacaccactgaaaaagagcattagaca |
100 |
Q |
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| T |
6214622 |
tccaaatgcttataccacttgatattaatccatttatagttggcagaatacttgctggactatctgtccaactcagatcactgaaaaagaccattagaca |
6214721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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