View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_high_8 (Length: 393)
Name: NF10722_high_8
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 43163576 - 43163905
Alignment:
| Q |
18 |
ggtttaagtatcgtaacttggaagtacctatggtgctaactatcagcagttgctaatgtgaacattatatgctgagttgcatttccttgttgcatcatgt |
117 |
Q |
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| T |
43163576 |
ggtttaagtatcgtaacttggaagtacctatggtgctaactatcagcagttgctaatgtgaacattatatgctgagttgcatttccttgttgcatcatgt |
43163675 |
T |
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| Q |
118 |
tttgcgaaatgtgggagatgttcatttgatgtcctgtaattgtttttgctactaaaacatacattctggatttccggtgaatgatattggaacgcttgtt |
217 |
Q |
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| T |
43163676 |
tttgcgaaatgtgggagatgttcatttgatgtcctgtaattgtttttgctactaaaacatacattctggatttccagtgaatgataatggaacgattgtt |
43163775 |
T |
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| Q |
218 |
gttgtatgtagcgaacaaaaacatcacgtagatgcatgaactattaacaattgttagatcttgcgtttgtaggaaaacatgggtggattaaaataagaag |
317 |
Q |
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| T |
43163776 |
gttgtatgtagcgaacaaaaacatcacttagatgcatgaactattaacaattgttagatcttgcgtttgtaggaaaacatgggtggattaaaataagaag |
43163875 |
T |
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| Q |
318 |
gatcac--tacagtgagatacttcccaatg |
345 |
Q |
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| T |
43163876 |
gatcactatatagtgagatacttcccaatg |
43163905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 51466647 - 51466770
Alignment:
| Q |
193 |
ggtgaatgatattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgtagatgcatgaactattaa-caattgttagatcttgcgtttgtagga |
291 |
Q |
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| T |
51466647 |
ggtgaattatattggaacaagtgttgctatatgtggtgaacaaaaatatcacgaagatgaactaactaataggcaatagttagatcttgcatttggagga |
51466746 |
T |
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| Q |
292 |
aaacatgggtggattaaaataaga |
315 |
Q |
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| T |
51466747 |
aaacatgggtggataaaaataaga |
51466770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 51464610 - 51464662
Alignment:
| Q |
101 |
tccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctg |
153 |
Q |
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| T |
51464610 |
tccttgttgcagcatgttttacataatgtgggaaatgttcatttgatgtcctg |
51464662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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