View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_10 (Length: 373)
Name: NF10722_low_10
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 3203154 - 3202813
Alignment:
| Q |
19 |
gaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgccttctccacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203154 |
gaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgccttctccacc |
3203055 |
T |
|
| Q |
119 |
tgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatcccttccatacgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203054 |
tgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatcccttccatacgat |
3202955 |
T |
|
| Q |
219 |
tatgttggccacggaactcacacggccagcacggccgctggaaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202954 |
tatgttggccacggaactcacacggccagcacggccgctggaaggcccgtgaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatgg |
3202855 |
T |
|
| Q |
319 |
caccatatgcacacttggcaatttacaaagtatgcggcgtct |
360 |
Q |
| |
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| T |
3202854 |
caccatatgcacacttggcaatttacaaagtatgcggcgtct |
3202813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 3209128 - 3208794
Alignment:
| Q |
19 |
gaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgccttctccacc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
3209128 |
gaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctcacatccttccttttctgatgaggggatgccttcaccacc |
3209029 |
T |
|
| Q |
119 |
tgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatcccttccatacgat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
3209028 |
tgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattcatcccttccatacgat |
3208929 |
T |
|
| Q |
219 |
tatgttggccacggaactcacacggccagcacggccgctggaaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactgcaattggcatgg |
318 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3208928 |
gatgttggccatggaactcacacagccagcacggccgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactgcaattggcatgg |
3208829 |
T |
|
| Q |
319 |
caccatatgcacacttggcaatttacaaagtatgc |
353 |
Q |
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| T |
3208828 |
caccatatgcacacttggcaatttacaaagtatgc |
3208794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 3217075 - 3216733
Alignment:
| Q |
20 |
aaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgccttctccacct |
119 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| || ||||||||||| ||||||||| |
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| T |
3217075 |
aaattccaatctcggtaaagggatcataattggaatcctggacacaggaatatccctctcccatccttccttttctgacgagggaatgccctctccacct |
3216976 |
T |
|
| Q |
120 |
gcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgt---------aaattcatcccttc |
210 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||| ||| |||| |
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| T |
3216975 |
gcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaacaagaagctcattggagcaaggaacttcgtcacagacacaaatttatctcttc |
3216876 |
T |
|
| Q |
211 |
catacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactgcaat |
310 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||| | || || |||||||| || || || || ||||| |||| |
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| T |
3216875 |
cattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgctaaaggtacggcaac |
3216776 |
T |
|
| Q |
311 |
tggcatggcaccatatgcacacttggcaatttacaaagtatgc |
353 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||||||| |
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| T |
3216775 |
aggcatggcaccagatgcacacttggcaatctacaaagtatgc |
3216733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 3232140 - 3232106
Alignment:
| Q |
114 |
ccacctgcaaaatggaatggccattgtgaattcac |
148 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
3232140 |
ccacctgcaaaatggaaaggccattgtgaattcac |
3232106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
| Q |
114 |
ccacctgcaaaatggaatggccattgtgaattca |
147 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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| T |
3177901 |
ccacctgcaaaatggaaaggccattgtgaattca |
3177934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 3221926 - 3221873
Alignment:
| Q |
95 |
cgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcac |
148 |
Q |
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|||||| |||||||| | ||||||||||||||||| |||||||| |||||||| |
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| T |
3221926 |
cgatgaaggaatgccgccaccacctgcaaaatggaaaggccattgcgaattcac |
3221873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
| Q |
114 |
ccacctgcaaaatggaatggccattgtgaattca |
147 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
3240939 |
ccacctgcaaaatggaaaggccattgtgaattca |
3240906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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