View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_16 (Length: 326)

Name: NF10722_low_16
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_16
NF10722_low_16
[»] scaffold0004 (2 HSPs)
scaffold0004 (19-146)||(90855-90982)
scaffold0004 (250-315)||(90705-90770)
[»] chr4 (16 HSPs)
chr4 (220-288)||(27434682-27434750)
chr4 (220-277)||(4895044-4895101)
chr4 (223-299)||(1051192-1051268)
chr4 (220-288)||(24294539-24294607)
chr4 (220-288)||(24969572-24969640)
chr4 (220-282)||(4552857-4552919)
chr4 (220-297)||(20435162-20435239)
chr4 (220-297)||(42274514-42274591)
chr4 (220-288)||(1298984-1299052)
chr4 (220-288)||(23928598-23928666)
chr4 (220-282)||(530706-530768)
chr4 (220-282)||(55107596-55107658)
chr4 (220-288)||(21048736-21048804)
chr4 (220-288)||(24915825-24915893)
chr4 (220-288)||(32318751-32318819)
chr4 (220-288)||(35360748-35360816)
[»] chr2 (14 HSPs)
chr2 (220-288)||(39243014-39243082)
chr2 (220-288)||(7737137-7737205)
chr2 (220-288)||(34455957-34456025)
chr2 (220-288)||(9281378-9281446)
chr2 (220-288)||(24101863-24101931)
chr2 (220-288)||(27920644-27920712)
chr2 (220-288)||(43476018-43476086)
chr2 (220-288)||(45408697-45408765)
chr2 (220-274)||(12850587-12850641)
chr2 (220-288)||(1924011-1924079)
chr2 (224-288)||(2818742-2818806)
chr2 (220-288)||(3116948-3117016)
chr2 (220-288)||(20892957-20893025)
chr2 (220-288)||(23835949-23836017)
[»] chr3 (28 HSPs)
chr3 (220-277)||(157010-157067)
chr3 (220-288)||(50099506-50099574)
chr3 (220-282)||(404117-404179)
chr3 (220-288)||(44920677-44920745)
chr3 (220-287)||(43150552-43150619)
chr3 (220-282)||(10441295-10441357)
chr3 (220-297)||(36657455-36657532)
chr3 (220-288)||(10254641-10254709)
chr3 (220-288)||(25446322-25446390)
chr3 (220-288)||(26906526-26906594)
chr3 (220-288)||(36278787-36278855)
chr3 (220-288)||(45487871-45487939)
chr3 (220-288)||(46664248-46664316)
chr3 (221-277)||(46679334-46679390)
chr3 (220-282)||(12789678-12789740)
chr3 (220-277)||(44611423-44611480)
chr3 (220-277)||(45712945-45713002)
chr3 (220-288)||(3970522-3970590)
chr3 (220-288)||(4072304-4072372)
chr3 (220-288)||(8831813-8831881)
chr3 (220-288)||(12838149-12838217)
chr3 (220-288)||(13078194-13078262)
chr3 (220-288)||(21969188-21969256)
chr3 (220-288)||(21991624-21991692)
chr3 (220-288)||(22101237-22101305)
chr3 (220-288)||(32237425-32237493)
chr3 (220-288)||(43639112-43639180)
chr3 (220-288)||(55340324-55340392)
[»] chr7 (18 HSPs)
chr7 (220-288)||(40358187-40358255)
chr7 (220-282)||(9285751-9285813)
chr7 (220-282)||(9289818-9289880)
chr7 (220-288)||(20184269-20184337)
chr7 (220-300)||(31521544-31521624)
chr7 (220-288)||(37093840-37093908)
chr7 (220-274)||(38989116-38989170)
chr7 (220-297)||(30594765-30594842)
chr7 (220-297)||(38883293-38883370)
chr7 (220-288)||(24836092-24836160)
chr7 (220-288)||(34052351-34052419)
chr7 (220-288)||(35339309-35339377)
chr7 (220-282)||(31231651-31231713)
chr7 (220-282)||(33749716-33749778)
chr7 (220-277)||(10936512-10936569)
chr7 (220-288)||(30259097-30259165)
chr7 (220-288)||(39143743-39143811)
chr7 (220-300)||(39617860-39617940)
[»] chr6 (12 HSPs)
chr6 (220-288)||(4890511-4890579)
chr6 (220-288)||(885457-885525)
chr6 (222-277)||(17279601-17279656)
chr6 (220-297)||(11687165-11687242)
chr6 (220-288)||(7808681-7808749)
chr6 (220-288)||(13439768-13439836)
chr6 (220-288)||(15546704-15546772)
chr6 (220-288)||(21379972-21380040)
chr6 (220-282)||(14393636-14393698)
chr6 (220-273)||(3369057-3369110)
chr6 (220-288)||(13172605-13172672)
chr6 (222-282)||(31764362-31764422)
[»] chr5 (12 HSPs)
chr5 (224-288)||(13754322-13754386)
chr5 (220-297)||(15855915-15855992)
chr5 (220-297)||(16473027-16473104)
chr5 (220-297)||(35420634-35420711)
chr5 (220-288)||(12744898-12744966)
chr5 (220-288)||(20476503-20476571)
chr5 (220-282)||(21262015-21262077)
chr5 (220-297)||(12807983-12808060)
chr5 (220-277)||(37552350-37552407)
chr5 (220-277)||(37655194-37655251)
chr5 (220-288)||(1138631-1138699)
chr5 (226-274)||(1384373-1384421)
[»] scaffold0653 (1 HSPs)
scaffold0653 (220-282)||(3430-3492)
[»] scaffold0188 (1 HSPs)
scaffold0188 (220-288)||(7158-7226)
[»] chr8 (10 HSPs)
chr8 (220-288)||(17426659-17426727)
chr8 (220-300)||(23940823-23940903)
chr8 (220-288)||(29780990-29781058)
chr8 (220-282)||(8210395-8210457)
chr8 (220-297)||(38520090-38520167)
chr8 (220-288)||(4262007-4262075)
chr8 (220-288)||(11828627-11828695)
chr8 (220-288)||(38629546-38629614)
chr8 (220-288)||(40891085-40891153)
chr8 (220-288)||(40393795-40393862)
[»] chr1 (22 HSPs)
chr1 (220-282)||(3607766-3607828)
chr1 (220-297)||(50627203-50627280)
chr1 (220-288)||(957661-957729)
chr1 (220-288)||(2854563-2854631)
chr1 (220-288)||(6079456-6079524)
chr1 (220-288)||(9978082-9978150)
chr1 (220-288)||(23698533-23698601)
chr1 (220-288)||(40647190-40647258)
chr1 (220-288)||(48645045-48645113)
chr1 (220-288)||(48954245-48954313)
chr1 (220-288)||(50856352-50856420)
chr1 (220-297)||(5189541-5189618)
chr1 (220-277)||(19954953-19955010)
chr1 (220-288)||(1387850-1387918)
chr1 (220-288)||(2125101-2125169)
chr1 (220-276)||(4299435-4299491)
chr1 (220-288)||(15324699-15324767)
chr1 (220-288)||(26208497-26208565)
chr1 (220-288)||(27240955-27241023)
chr1 (221-297)||(36880584-36880660)
chr1 (220-288)||(47940601-47940669)
chr1 (220-288)||(51276726-51276794)
[»] scaffold0122 (1 HSPs)
scaffold0122 (220-288)||(45906-45974)
[»] scaffold0107 (1 HSPs)
scaffold0107 (220-288)||(51135-51203)


Alignment Details
Target: scaffold0004 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 90982 - 90855
Alignment:
Q  19 gttcaatgccctctaactagcctgcatatttctttctttgtccaaaatgtcactagtgttggcaaataatgggattgtggagtaacattcactcttgaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  90982 gttcaatgccctctaactagcctgcatatttctttctttgtccaaaaagtcactagtgttggcaaataatgggattgtggagtaacattcactcttgaat 90883  T
Q  119 gggtggataccaacaactctctacaaag 146  Q
    |||||||||||||||||||| |||||||    
T  90882 gggtggataccaacaactctttacaaag 90855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 90770 - 90705
Alignment:
Q  250 aggaaattatgataaatttagttaagaatcataagaaaatcatttaagaaaatgtcaagaacctat 315  Q
    ||||||| ||| |||||||||||||||| ||||| |||||||||||| |||||| |||||||||||    
T  90770 aggaaatcatggtaaatttagttaagaaccataaaaaaatcatttaaaaaaatgacaagaacctat 90705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 27434682 - 27434750
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| |||| |||||    
T  27434682 ataacaaactttgagaaaattatgaatttgaggaaattatggtaaatttagttaagaaccatacgaaaa 27434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 4895044 - 4895101
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| |||||||| || |||||||||| ||| ||||||||||||||||    
T  4895044 ataacaaactttgagaaaattatgaatttgaggaaatcatggtaaatttagttaagaa 4895101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 1051268 - 1051192
Alignment:
Q  223 acaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaagaa 299  Q
    ||||||||| | ||||||||||| |||| ||||| || ||||||||| |||||||| ||| ||||||||| ||||||    
T  1051268 acaaactttaagaaaattataaatttgaagaaatcataataaatttaattaagaattatacgaaaatcatgtaagaa 1051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 24294539 - 24294607
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||  || |||||||||||||| | |||||||||||||| |||| |||||    
T  24294539 ataacaaactttgagaaaattacgaatttgaggaaattatggtgaatttagttaagaaccatacgaaaa 24294607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 24969640 - 24969572
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||| | |||||||||||||| |||| |||||    
T  24969640 ataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 24969572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 4552857 - 4552919
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||||| |||||||||||||| ||||    
T  4552857 ataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccata 4552919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 20435239 - 20435162
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    ||||||||||| || ||||||||  | |||||||||| ||||| |||||||||||||| |||| ||||| ||| ||||    
T  20435239 ataacaaacttcgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacgaaaagcatctaag 20435162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 42274591 - 42274514
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| ||||| ||| ||||    
T  42274591 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcatctaag 42274514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 1298984 - 1299052
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | |||||||||||||| ||||||||||    
T  1298984 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataagaaaa 1299052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 23928666 - 23928598
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||| ||||| ||||||||  | |||||||||| ||| | ||||||||||||||||||| |||||    
T  23928666 ataacaaattttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaatcatacgaaaa 23928598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 530768 - 530706
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| ||||    
T  530768 ataacaaactttgagaaaattatggatttgaggaaatgatggtgaatttagttaagaaccata 530706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 55107596 - 55107658
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||| |||||||||| ||||| ||||    
T  55107596 ataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttagtaaagaaccata 55107658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 21048804 - 21048736
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    ||||||||||| || ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  21048804 ataacaaacttcgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 21048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 24915893 - 24915825
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | |||||||||||||| |||| |||||    
T  24915893 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaa 24915825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 32318819 - 32318751
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  |  ||||||||| ||| | |||||||||||||| |||| |||||    
T  32318819 ataacaaactttgagaaaattatggatctgaggaaatcatggtgaatttagttaagaaccatacgaaaa 32318751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 35360748 - 35360816
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||||||||| |||| |||||    
T  35360748 ataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaa 35360816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 39243082 - 39243014
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||||| |||||    
T  39243082 ataacaaactttgataaaatcataaatttgatgaaatcacgataaatttagttaagaatcatacgaaaa 39243014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7737137 - 7737205
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||    |||||||||| ||| ||||||||||||||||||||| |||||    
T  7737137 ataacaaactttgagaaaattatggctttgaggaaatcatggtaaatttagttaagaatcatacgaaaa 7737205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34455957 - 34456025
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||| | |||||||||||||||| |||||| ||| ||| |||| |||||    
T  34455957 ataacaaactttgagaaaattatagatttgaggaaattatgatgaatttaattaggaaccatacgaaaa 34456025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 9281446 - 9281378
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||  | |||||||||||||| |||| |||||    
T  9281446 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatatgaaaa 9281378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 24101931 - 24101863
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| || ||||||||||||| |||| |||||    
T  24101931 ataacaaactttgagaaaattatggatttgaggaaatcatggtatatttagttaagaaccatacgaaaa 24101863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 27920644 - 27920712
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  27920644 ataacaaactttgaaaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 27920712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 43476018 - 43476086
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||| ||||||||| |||||||| || |||||||||| ||| | |||||||||||||| |||| |||||    
T  43476018 ataataaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 43476086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 45408697 - 45408765
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| |||||||| ||||||| |||| |||||    
T  45408697 ataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttaattaagaaccatacgaaaa 45408765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 12850641 - 12850587
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaa 274  Q
    |||||||||||||| ||||||||  | |||||||||| ||| |||||||||||||    
T  12850641 ataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttagttaa 12850587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 1924079 - 1924011
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | | |||||||| ||| | |||||||||||||| |||| |||||    
T  1924079 ataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaaccatacgaaaa 1924011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 2818742 - 2818806
Alignment:
Q  224 caaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  2818742 caaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 2818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 3116948 - 3117016
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| || || |||||||||||||| |||| |||||    
T  3116948 ataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaaccatacgaaaa 3117016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 20892957 - 20893025
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||| ||||||||  ||  ||||||||||||||||| |||||    
T  20892957 ataacaaactttgagaaaattatggatttgatgaaattattgtatttttagttaagaatcatacgaaaa 20893025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 23835949 - 23836017
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| ||||||| ||||| || |||| |||||    
T  23835949 ataacaaactttgagaaaattatggatttgaggaaatcatggtaaattttgttaaaaaccatacgaaaa 23836017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 157067 - 157010
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||    
T  157067 ataacaaactttgagaaaattatggatttgaggaaattatgataaatttagttaagaa 157010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 50099506 - 50099574
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||||||| | |||||||||||||| |||| |||||    
T  50099506 ataacaaactttgagaaaattatgaatttgaggaaattatggtgaatttagttaagaaccatacgaaaa 50099574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 404117 - 404179
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||| |||||||||||| ||| | |||||||||||||| ||||    
T  404117 ataacaaactttgagaaaattatagacttgaggaaatcatggtgaatttagttaagaaccata 404179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 44920745 - 44920677
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||| ||||||||| ||||||||||| ||||| |||| ||  |||||||||||||||| ||||||||||    
T  44920745 ataataaactttgagaaaattataaatttgagaaaatcattgtaaatttagttaagaaccataagaaaa 44920677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 43150552 - 43150619
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaa 287  Q
    |||||||||||||| |||||||| || |||||||||| ||  | ||||||||||||||||||| ||||    
T  43150552 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaatcatacgaaa 43150619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 10441357 - 10441295
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||||||||    
T  10441357 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaatcata 10441295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 36657532 - 36657455
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  36657532 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaag 36657455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 10254641 - 10254709
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||||| |||||||||||||| |||| |||||    
T  10254641 ataacaaactttgaaaaaattatggatttgagaaaatcatgatgaatttagttaagaaccatacgaaaa 10254709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 25446322 - 25446390
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  25446322 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 25446390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 26906526 - 26906594
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||  | |||||||||||||| |||| |||||    
T  26906526 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 26906594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 36278855 - 36278787
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||  | |||||||||||||| |||| |||||    
T  36278855 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 36278787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 45487871 - 45487939
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    ||||||||| |||| |||||||| || |||||||||| ||| | |||||||||||||| |||| |||||    
T  45487871 ataacaaacattgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 45487939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 46664248 - 46664316
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||||||||||  |||  |||| ||||||| |||||    
T  46664248 ataacaaactttgagaaaattatgaatttgaggaaattatgatattttttattaaaaatcatacgaaaa 46664316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 46679334 - 46679390
Alignment:
Q  221 taacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    ||||||||||||| ||||||||  | |||||||||||||| | ||||||||||||||    
T  46679334 taacaaactttgagaaaattatggatttgaggaaattatggtgaatttagttaagaa 46679390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 12789678 - 12789740
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| |||||||| || |||||||||| ||| | |||||| ||||||| ||||    
T  12789678 ataacaaactttgaaaaaattatgaatttgaggaaatcatggtgaatttaattaagaaccata 12789740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 44611480 - 44611423
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| |||||||| || |||| ||||| ||| | ||||||||||||||    
T  44611480 ataacaaactttgagaaaattatgaatttgaagaaatcatggtgaatttagttaagaa 44611423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 45713002 - 45712945
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||||||||||||    |||||||||| ||| | ||||||||||||||    
T  45713002 ataacaaactttgataaaattatggctttgaggaaatcatggtgaatttagttaagaa 45712945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 3970590 - 3970522
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||||||||| |||| |||||    
T  3970590 ataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaa 3970522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 4072372 - 4072304
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | | |||||||| ||| | |||||||||||||| |||| |||||    
T  4072372 ataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaaccatacgaaaa 4072304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 8831813 - 8831881
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||| ||||| ||| | |||||||||||||| |||| |||||    
T  8831813 ataacaaactttgagaaaattatggatttgaagaaatcatggtgaatttagttaagaaccatacgaaaa 8831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 12838149 - 12838217
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | ||||||||||| || |||| |||||    
T  12838149 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaaccatacgaaaa 12838217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 13078262 - 13078194
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||||||||| |||| |||||    
T  13078262 ataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaa 13078194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 21969256 - 21969188
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||||||||| |||| |||||    
T  21969256 ataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaa 21969188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 21991692 - 21991624
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||||||||| |||| |||||    
T  21991692 ataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaa 21991624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 22101237 - 22101305
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||  | |||||||||||||| |||| |||||    
T  22101237 ataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 22101305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 32237493 - 32237425
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  |  |||| |||| ||| |||||||||||||||| |||| |||||    
T  32237493 ataacaaactttgagaaaattatggatctgagaaaatcatggtaaatttagttaagaaccatacgaaaa 32237425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 43639180 - 43639112
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||| ||||| ||| | ||||| ||||||||||||| |||||    
T  43639180 ataacaaactttgagaaaattatggatttgaagaaatcatggtgaatttggttaagaatcatacgaaaa 43639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 55340392 - 55340324
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | ||| ||||||||||||||| |||||    
T  55340392 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatatagttaagaatcatacgaaaa 55340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 40358187 - 40358255
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||| | ||||||||||||||||||| |||||    
T  40358187 ataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaatcataggaaaa 40358255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 9285813 - 9285751
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||||||||||||||| |||||||||| ||| | |||||| ||||||| ||||    
T  9285813 ataacaaactttgataaaattataaatttgaggaaatcatggtgaatttaattaagaaccata 9285751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 9289880 - 9289818
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||||||||||||||| |||||||||| ||| | |||||| ||||||| ||||    
T  9289880 ataacaaactttgataaaattataaatttgaggaaatcatggtgaatttaattaagaaccata 9289818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 20184337 - 20184269
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | ||||||||||||||||||| |||||    
T  20184337 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaatcatacgaaaa 20184269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 31521624 - 31521544
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaagaaa 300  Q
    |||| ||||||||| |||||||| || ||||| |||| ||| |||||||||||||||| |||| ||||| ||| |||||||    
T  31521624 ataataaactttgaaaaaattatgaatttgagaaaatcatggtaaatttagttaagaaccatacgaaaagcatctaagaaa 31521544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 37093840 - 37093908
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||||| |||||||||| ||| | ||||||||||| || |||| |||||    
T  37093840 ataacaaactttgagaaaattataaatttgaggaaatcatggtgaatttagttaaaaaccatacgaaaa 37093908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 38989170 - 38989116
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaa 274  Q
    |||||||||||||| ||||||||| | || || ||||||||||||||||||||||    
T  38989170 ataacaaactttgagaaaattatagatttaagaaaattatgataaatttagttaa 38989116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 30594765 - 30594842
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| ||||| ||| ||||    
T  30594765 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcatctaag 30594842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 38883293 - 38883370
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  38883293 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaag 38883370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 24836092 - 24836160
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  24836092 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 24836160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34052351 - 34052419
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||| | ||||||| |||||| |||| |||||    
T  34052351 ataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagctaagaaccatacgaaaa 34052419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 35339377 - 35339309
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||| ||||| ||||| |||||||||||||| |||| |||||    
T  35339377 ataacaaactttgagaaaattatggatttgaagaaatcatgatgaatttagttaagaaccatacgaaaa 35339309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 31231713 - 31231651
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| ||||    
T  31231713 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccata 31231651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 33749716 - 33749778
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||| ||||||||| |||||||| || || ||||||| ||||| |||||||||||||| ||||    
T  33749716 ataataaactttgagaaaattatgaatttaaggaaatcatgatgaatttagttaagaaccata 33749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 10936569 - 10936512
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| ||||||||| | |||||||| | ||| | ||||||||||||||    
T  10936569 ataacaaactttgagaaaattatagatttgaggaagtcatggtgaatttagttaagaa 10936512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 30259165 - 30259097
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | |||||||||||||| |||| |||||    
T  30259165 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataggaaaa 30259097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 39143811 - 39143743
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| || |||||  | |||||||||||||| | |||||||| ||||| |||| |||||    
T  39143811 ataacaaactttgagaatattatggatttgaggaaattatggtgaatttagtcaagaaccatacgaaaa 39143743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 39617940 - 39617860
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaagaaa 300  Q
    |||||||||||||| ||||||||  | | |||||||| ||| | |||||||||||||| |||| ||| | ||| |||||||    
T  39617940 ataacaaactttgagaaaattatggattggaggaaatcatggtgaatttagttaagaaccatacgaagaacatctaagaaa 39617860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 4890579 - 4890511
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||| |||||||||||||||| |||| |||||    
T  4890579 ataacaaactttgagaaaattatgaatttgaggaaatcatggtaaatttagttaagaaccatacgaaaa 4890511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 885457 - 885525
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||||| ||||||||||||||||||| |||||    
T  885457 ataacaaactttgagaaaattatggatttgagaaaatcatgatgaatttagttaagaatcataggaaaa 885525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 17279601 - 17279656
Alignment:
Q  222 aacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    ||||||||||||||||||||| || |||| ||||| ||||| ||||||||||||||    
T  17279601 aacaaactttgataaaattatgaatttgaagaaatcatgatgaatttagttaagaa 17279656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 11687242 - 11687165
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  11687242 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaag 11687165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7808681 - 7808749
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||| | |||||||||| ||| ||  |||||||||||| |||| |||||    
T  7808681 ataacaaactttgagaaaattatagatttgaggaaatcatggtatttttagttaagaaccatacgaaaa 7808749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 13439768 - 13439836
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  13439768 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 13439836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 15546704 - 15546772
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| |||||||| ||||||| |||| |||||    
T  15546704 ataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttaattaagaaccatacgaaaa 15546772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 21380040 - 21379972
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    ||||||||| |||| |||||||| || |||||||||| ||| | |||||||||||||| |||| |||||    
T  21380040 ataacaaacattgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 21379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 14393636 - 14393698
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| ||||    
T  14393636 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccata 14393698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 3369057 - 3369110
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagtta 273  Q
    |||||||||||||| |||||||| || |||||||||| ||| | ||||||||||    
T  3369057 ataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagtta 3369110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 13172672 - 13172605
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| || || |||||||||||||| |||| |||||    
T  13172672 ataacaaactttgagaaaattatggatttgaggaaatgat-atgaatttagttaagaaccatacgaaaa 13172605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 31764422 - 31764362
Alignment:
Q  222 aacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||| |||||||| || ||||| |||| ||| | |||||||||||||| ||||    
T  31764422 aacaaactttgagaaaattatgaatttgagaaaataatggtgaatttagttaagaaccata 31764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 13754386 - 13754322
Alignment:
Q  224 caaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||| |||||||| || |||||||||||||| | ||||||||||||||||||| |||||    
T  13754386 caaactttgagaaaattatgaatttgaggaaattatggtgaatttagttaagaatcatacgaaaa 13754322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 15855915 - 15855992
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  15855915 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaag 15855992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 16473027 - 16473104
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  16473027 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaag 16473104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 35420711 - 35420634
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  35420711 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaag 35420634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 12744898 - 12744966
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||| | |||||||| || ||||||| |||||    
T  12744898 ataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagtcaaaaatcatacgaaaa 12744966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 20476503 - 20476571
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||| ||||| ||||||||  | |||||||||| ||||| |||||||||||||| |||| |||||    
T  20476503 ataacaaattttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacgaaaa 20476571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 21262015 - 21262077
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| |||||| |  | |||||||||| ||||| |||||||||||||| ||||    
T  21262015 ataacaaactttgagaaaattgtggatttgaggaaatcatgatgaatttagttaagaaccata 21262077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 12807983 - 12808060
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||| |||||||||| ||||| || |||||    
T  12807983 ataacaaactttgaaaaaattatggatttaaggaaatcatggtgaatttagtcaagaatcatacgaaaaacacttaag 12808060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 37552407 - 37552350
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| |||||||| || |||||||| | ||| | ||||||||||||||    
T  37552407 ataacaaactttgagaaaattatgaatttgaggaagtcatggtgaatttagttaagaa 37552350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 37655251 - 37655194
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| |||||||| || |||||||| | ||| | ||||||||||||||    
T  37655251 ataacaaactttgagaaaattatgaatttgaggaagtcatggtgaatttagttaagaa 37655194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 1138631 - 1138699
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| || || |||||||||||||| |||| |||||    
T  1138631 ataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaaccatacgaaaa 1138699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 1384421 - 1384373
Alignment:
Q  226 aactttgataaaattataaacttgaggaaattatgataaatttagttaa 274  Q
    |||||||| ||||||||| | |||||||||| || ||||||||||||||    
T  1384421 aactttgagaaaattatagatttgaggaaatcataataaatttagttaa 1384373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 3492 - 3430
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||||||||||||||| |||||||||| ||| | |||||| ||||||| ||||    
T  3492 ataacaaactttgataaaattataaatttgaggaaatcatggtgaatttaattaagaaccata 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7158 - 7226
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||||| |||||||||||||| |||| |||||    
T  7158 ataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacgaaaa 7226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 17426727 - 17426659
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||| | |||||||||| ||| | |||||||||||||| |||| |||||    
T  17426727 ataacaaactttgagaaaattatagatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 17426659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 23940903 - 23940823
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaagaaa 300  Q
    |||||||||||||| |||||||   | |||||||||| ||| | ||||||||||||||||||| ||||| || ||||||||    
T  23940903 ataacaaactttgagaaaattacggatttgaggaaatcatggtgaatttagttaagaatcatacgaaaagcacttaagaaa 23940823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 29781058 - 29780990
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||||||| ||||||||||||| || |||| |||||    
T  29781058 ataacaaactttgagaaaattatggatttgaggaaattatggtaaatttagttaaaaaccatacgaaaa 29780990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 8210395 - 8210457
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||||| ||||| |||||||||||||    
T  8210395 ataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttggttaagaatcata 8210457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 38520090 - 38520167
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| |||||||| || |||||||||| ||| | ||||||||||| || |||| ||||| || |||||    
T  38520090 ataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaaaaaacatacgaaaagcacttaag 38520167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 4262075 - 4262007
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  |||||||||||| ||  | |||||||||||||| |||| |||||    
T  4262075 ataacaaactttgagaaaattatggacttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 4262007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 11828695 - 11828627
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||| ||  | |||||||||||||| | |||||||||||||| |||| |||||    
T  11828695 ataacaaactttgagaaaataatggatttgaggaaattatggtgaatttagttaagaaccatacgaaaa 11828627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 38629546 - 38629614
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||| ||||||||| |||||||| || |||||||||| ||| | |||||||||||||| |||| |||||    
T  38629546 ataataaactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 38629614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 40891085 - 40891153
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  40891085 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 40891153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 40393795 - 40393862
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||| ||||| ||||||| ||| |||||||||||||| | ||||||| |||||| ||||| ||||    
T  40393795 ataacaaattttgagaaaatta-aaatttgaggaaattatggtgaatttagctaagaaccataataaaa 40393862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 3607828 - 3607766
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcata 282  Q
    |||||||||||||| ||||||||  | |||||||||| ||||| |||||||||||||| ||||    
T  3607828 ataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccata 3607766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 50627203 - 50627280
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| ||||| ||| ||||    
T  50627203 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatataag 50627280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 957661 - 957729
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | ||||||||||||||||||| |||||    
T  957661 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaatcatacgaaaa 957729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 2854631 - 2854563
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||  | |||||||||||||| |||| |||||    
T  2854631 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 2854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 6079456 - 6079524
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||| |||| |||||    
T  6079456 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 6079524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 9978150 - 9978082
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||  | ||||||||||||||||||| |||||    
T  9978150 ataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaatcatacgaaaa 9978082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 23698601 - 23698533
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||  | |||||||||||||| |||| |||||    
T  23698601 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 23698533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 40647190 - 40647258
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | ||||||||||| ||||||| |||||    
T  40647190 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaatcatacgaaaa 40647258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 48645113 - 48645045
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||||||||||| |||| |||||    
T  48645113 ataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaagcatacgaaaa 48645045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 48954313 - 48954245
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| |||||||| || |||||||||| ||  | |||||||||||||| |||| |||||    
T  48954313 ataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaaccatatgaaaa 48954245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 50856420 - 50856352
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||| ||||| ||||||||  |||||||||||| ||| | ||||||| ||||||||||| |||||    
T  50856420 ataacaaattttgagaaaattatggacttgaggaaataatggtgaatttagctaagaatcatacgaaaa 50856352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 5189541 - 5189618
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    |||||||||||||| ||||||||  | || ||||||| ||| | |||||||||||||| |||| ||||| ||| ||||    
T  5189541 ataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaagcatctaag 5189618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 19955010 - 19954953
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaa 277  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | ||||||||||||||    
T  19955010 ataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaa 19954953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 1387850 - 1387918
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||| ||||||||| |||||||| || |||||||||| ||| ||  |||||||||||| |||| |||||    
T  1387850 ataataaactttgagaaaattatgaatttgaggaaatcatggtatctttagttaagaaccatacgaaaa 1387918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 2125169 - 2125101
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||||| || |  |||| ||| | |||||||||||||| |||| |||||    
T  2125169 ataacaaactttgagaaaattataaatttaaaaaaatcatggtgaatttagttaagaaccatacgaaaa 2125101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 4299491 - 4299435
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaaga 276  Q
    |||||||||||||| ||||||||  | |||||||||| ||| | |||||||||||||    
T  4299491 ataacaaactttgagaaaattatggatttgaggaaataatggtgaatttagttaaga 4299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 15324699 - 15324767
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||||||||| ||  | |||||||||||||| |||| |||||    
T  15324699 ataacaaactttgagaaaattatggatttgaggaaatcatagtgaatttagttaagaaccatacgaaaa 15324767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 26208497 - 26208565
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | |||| ||||||||| | ||||||||| |||| |||| |||||    
T  26208497 ataacaaactttgagaaaattatggatttgaagaaattatggtgaatttagttcagaaccatacgaaaa 26208565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 27241023 - 27240955
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | |||||||||||||| |||| |||||    
T  27241023 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaa 27240955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 36880584 - 36880660
Alignment:
Q  221 taacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaatcatttaag 297  Q
    ||||||||||||| ||||||||  | |||||||||| ||| ||  |||||||||||| |||| ||||| ||| ||||    
T  36880584 taacaaactttgagaaaattatggatttgaggaaatcatggtatttttagttaagaaccatacgaaaagcatctaag 36880660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 47940669 - 47940601
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | | |||||||| ||| | |||||||||||||| |||| |||||    
T  47940669 ataacaaactttgagaaaattatggattcgaggaaatcatggtgaatttagttaagaaccatacgaaaa 47940601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 51276794 - 51276726
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||| ||||||||| ||||||||  | |||||||||| || || |||||||||||||| |||| |||||    
T  51276794 ataataaactttgagaaaattatggatttgaggaaatcataatgaatttagttaagaaccatacgaaaa 51276726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 45906 - 45974
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
    |||||||||||||| ||||||||  | ||||| |||| ||| | |||||||||||||| ||||||||||    
T  45906 ataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccataagaaaa 45974  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 51135 - 51203
Alignment:
Q  220 ataacaaactttgataaaattataaacttgaggaaattatgataaatttagttaagaatcataagaaaa 288  Q
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T  51135 ataacaaactttgagaaaattatgaatttaaggaaatcatagtgaatttagttaagaaccatatgaaaa 51203  T

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