View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_19 (Length: 306)

Name: NF10722_low_19
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_19
NF10722_low_19
[»] chr8 (4 HSPs)
chr8 (99-288)||(12587193-12587391)
chr8 (99-202)||(27323205-27323308)
chr8 (101-216)||(35036079-35036198)
chr8 (198-247)||(27324409-27324458)
[»] chr1 (1 HSPs)
chr1 (99-288)||(21880191-21880389)
[»] chr7 (1 HSPs)
chr7 (99-288)||(22970236-22970434)
[»] chr3 (1 HSPs)
chr3 (99-288)||(49602743-49602941)
[»] chr6 (2 HSPs)
chr6 (99-246)||(6901002-6901149)
chr6 (248-288)||(6900763-6900803)
[»] chr2 (1 HSPs)
chr2 (101-249)||(22329701-22329848)
[»] chr5 (1 HSPs)
chr5 (115-249)||(35360378-35360511)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 12587193 - 12587391
Alignment:
Q  99 gcaataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 198  Q
    ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587193 gcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 12587292  T
Q  199 tcaacaaggtaataatagatgttaactctcattacaataat---------aaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 288  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587293 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 12587391  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 27323205 - 27323308
Alignment:
Q  99 gcaataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 198  Q
    ||||||||||| | | |||||| |||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  27323205 gcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaataaagtttacacaatcaacataaattcaata 27323304  T
Q  199 tcaa 202  Q
    ||||    
T  27323305 tcaa 27323308  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 35036198 - 35036079
Alignment:
Q  101 aataaaatagcggtaaagtttaagattgttgaataatcccaaataatcactta----tcaaaccctaacaataaagtttacacaatcaacataaattcaa 196  Q
    |||||||||| || |||||| | ||| |||||||||||||||| || ||||||    | |||||||||||||||||||||||| ||||||||||||||||    
T  35036198 aataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacacttaattattaaaccctaacaataaagtttacactatcaacataaattcaa 35036099  T
Q  197 tatcaacaaggtaataatag 216  Q
    ||||||||| ||||||||||    
T  35036098 tatcaacaaagtaataatag 35036079  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 27324409 - 27324458
Alignment:
Q  198 atcaacaaggtaataatagatgttaactctcattacaataataaacaaat 247  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27324409 atcaacaaggtgataatagatgttaactctcattacaataataaacaaat 27324458  T

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Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 21880191 - 21880389
Alignment:
Q  99 gcaataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 198  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21880191 gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaattttacacaatcaacataaattcaata 21880290  T
Q  199 tcaacaaggtaataatagatgttaactctcattacaataat---------aaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 288  Q
    |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21880291 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 21880389  T

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Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 99 - 288
Target Start/End: Complemental strand, 22970434 - 22970236
Alignment:
Q  99 gcaataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 198  Q
    ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  22970434 gcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaattttttacaatcaacataaattcaata 22970335  T
Q  199 tcaacaaggtaataatagatgttaactctcattacaataataaa---------caaataagtttaaaatcataaaaataaggaagagagtgtacctctt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  22970334 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 22970236  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 49602743 - 49602941
Alignment:
Q  99 gcaataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 198  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  49602743 gcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttgtacaatcaacataaattcaata 49602842  T
Q  199 tcaacaaggtaataatagatgttaactctcattacaataat---------aaacaaataagtttaaaatcataaaaataaggaagagagtgtacctctt 288  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49602843 tcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcatataaataaggaagagagtgtacctctt 49602941  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 6901149 - 6901002
Alignment:
Q  99 gcaataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 198  Q
    ||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901149 gcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaata 6901050  T
Q  199 tcaacaaggtaataatagatgttaactctcattacaataataaacaaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901049 tcaacaaggtaataatagatgttaactctcattacaataataaacaaa 6901002  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 6900803 - 6900763
Alignment:
Q  248 aagtttaaaatcataaaaataaggaagagagtgtacctctt 288  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  6900803 aagtttaaaatcataaaaataaggaagagagtgcacctctt 6900763  T

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Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 22329701 - 22329848
Alignment:
Q  101 aataaaatagcggtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatc 200  Q
    ||||||||||| | ||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329701 aataaaatagcagcaaaattcaagattgta-aataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatc 22329799  T
Q  201 aacaaggtaataatagatgttaactctcattacaataataaacaaataa 249  Q
    |||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  22329800 aacaacttaataatagatgttaactctcattacaataacaaacaaataa 22329848  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 35360378 - 35360511
Alignment:
Q  115 aaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaaggtaataat 214  Q
    ||||||||| ||||||||||||| |||||||| |||| || |||||||||||||||||||  ||| ||||||| || || ||||||  ||||||||||||    
T  35360378 aaagtttaaaattgttgaataattccaaataaacact-attaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggcaaggtaataat 35360476  T
Q  215 agatgttaactctcattacaataataaacaaataa 249  Q
    | |  ||||||| | ||||  |||| |||||||||    
T  35360477 ataaattaactcacgttactgtaattaacaaataa 35360511  T

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