View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_2 (Length: 567)
Name: NF10722_low_2
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Complemental strand, 4132932 - 4132403
Alignment:
| Q |
16 |
caaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgtattctggcgcagcacgttgatgtctttctcagcagagtgcagaaac |
115 |
Q |
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| T |
4132932 |
caaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgtattttggcgcagcatgttgatgtctttctcagcagagtgcagaaac |
4132833 |
T |
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| Q |
116 |
gattgggaatatttgtgctctgactattggattatttctctttatggagggtgtgactttgagccaatagttctcaaacttcaatgaatgtgattcgtga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132832 |
gattgggaatatttgtgctctgactattggattatttctctttatggagggtgtgactttgagccaatagttctcaaacttcaatgaatgtgattcgtga |
4132733 |
T |
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| Q |
216 |
gaattggaagtagctagcttttcattttgtgattgtagttcgttctgttttctctgctcaatttctctgcataactacagatttctagtgtgtgggcgta |
315 |
Q |
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| T |
4132732 |
gaattggaagtagctagcttttcattttgcgattgtagttcgttctgttttctctgctcaatttctctgcataactacagatttctagtgtgtgggcgta |
4132633 |
T |
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| Q |
316 |
ttttatttgcaaggtagctgagttttcaatactagcagttttaactgttgtggagtcctggagaataattgaaatcggcgtggattgcatatatagagtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132632 |
ttttatttgcaaggtagctgagttttcaatactagcagttttaactgttgtggagtcctggagaataattgaaatcggcgtggattgcatatatagagtg |
4132533 |
T |
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| Q |
416 |
agggagtatttcatatgatggcagaatttgatcagtgggggtccgaggtggttttttgacaagaaatattttagctagtcaaactcatagcttatatatc |
515 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4132532 |
agggagtatttcatatcatggcagaatttgatcagtgggggtccgaggtggttttttgacaagaaatattttagctagtcaaactcatagct----tatt |
4132437 |
T |
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| Q |
516 |
tgttatctcataccaatatggctctactcatgca |
549 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
4132436 |
tgttatctcataccaacatggctctactcatgca |
4132403 |
T |
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