View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_23 (Length: 295)

Name: NF10722_low_23
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_23
NF10722_low_23
[»] chr3 (6 HSPs)
chr3 (1-212)||(53286405-53286616)
chr3 (101-208)||(39759403-39759512)
chr3 (126-204)||(43823478-43823557)
chr3 (13-102)||(43067921-43068011)
chr3 (5-102)||(43823614-43823711)
chr3 (5-64)||(39759275-39759334)
[»] chr6 (2 HSPs)
chr6 (1-212)||(11843139-11843358)
chr6 (101-208)||(3288486-3288595)
[»] chr7 (8 HSPs)
chr7 (101-212)||(48826802-48826914)
chr7 (101-208)||(33516424-33516533)
chr7 (124-208)||(43613833-43613918)
chr7 (106-204)||(46067201-46067301)
chr7 (12-65)||(48826702-48826755)
chr7 (101-206)||(11591464-11591570)
chr7 (5-64)||(11591350-11591409)
chr7 (5-64)||(33516591-33516650)
[»] chr4 (17 HSPs)
chr4 (88-212)||(48236161-48236288)
chr4 (101-208)||(41055478-41055587)
chr4 (101-208)||(55682033-55682142)
chr4 (100-208)||(374949-375059)
chr4 (101-208)||(7199255-7199364)
chr4 (101-204)||(51470076-51470181)
chr4 (101-212)||(49811683-49811796)
chr4 (124-208)||(37517466-37517550)
chr4 (124-208)||(37521682-37521766)
chr4 (5-64)||(7199127-7199186)
chr4 (5-64)||(20790135-20790194)
chr4 (5-64)||(37517633-37517692)
chr4 (5-64)||(37521849-37521908)
chr4 (5-63)||(55681905-55681963)
chr4 (12-55)||(375115-375158)
chr4 (5-52)||(42491054-42491101)
chr4 (9-64)||(51470250-51470305)
[»] chr1 (10 HSPs)
chr1 (101-208)||(42872601-42872710)
chr1 (101-208)||(52004838-52004947)
chr1 (101-208)||(52539329-52539438)
chr1 (101-208)||(20010724-20010833)
chr1 (9-72)||(42872772-42872835)
chr1 (5-102)||(52004978-52005075)
chr1 (9-51)||(52789510-52789552)
chr1 (9-52)||(36392452-36392495)
chr1 (9-55)||(52539227-52539273)
chr1 (9-61)||(20010905-20010957)
[»] scaffold0368 (2 HSPs)
scaffold0368 (126-208)||(7905-7988)
scaffold0368 (9-72)||(7754-7817)
[»] scaffold0101 (2 HSPs)
scaffold0101 (101-208)||(18740-18849)
scaffold0101 (9-64)||(18616-18671)
[»] scaffold0699 (1 HSPs)
scaffold0699 (124-208)||(23-108)
[»] chr8 (2 HSPs)
chr8 (101-208)||(38566624-38566733)
chr8 (5-102)||(38566496-38566593)
[»] chr5 (4 HSPs)
chr5 (124-208)||(37369639-37369724)
chr5 (101-204)||(41992333-41992438)
chr5 (5-102)||(37369779-37369876)
chr5 (5-55)||(41992227-41992277)
[»] chr2 (5 HSPs)
chr2 (101-207)||(33458361-33458469)
chr2 (4-118)||(21472731-21472845)
chr2 (5-102)||(33458500-33458597)
chr2 (101-204)||(34478944-34479049)
chr2 (13-64)||(34479118-34479169)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 53286616 - 53286405
Alignment:
Q  1 acatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286616 acatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgatcgggtcaaagcggacgctt 53286517  T
Q  101 ttcacttaaaaccgtttttaggccatttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53286516 ttcacttaaaaccgtttttaggccatttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttctt 53286417  T
Q  201 catcgtacaaac 212  Q
    ||||||||||||    
T  53286416 catcgtacaaac 53286405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 39759403 - 39759512
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  39759403 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 39759502  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  39759503 ttcatcgtac 39759512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 43823557 - 43823478
Alignment:
Q  126 tttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatc 204  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||    
T  43823557 tttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatc 43823478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 43067921 - 43068011
Alignment:
Q  13 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    ||||||| |||||||||||||||||||||| |||||||||||| ||||||||   |||||  || |||| ||||||||||||| |||||||    
T  43067921 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcgggcgctttt 43068011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 43823711 - 43823614
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    ||||||| ||||||| ||||||| |||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  43823711 gacacagtgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 43823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 39759275 - 39759334
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    |||||||  |||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  39759275 gacacagtactccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 39759334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11843139 - 11843358
Alignment:
Q  1 acatgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcg--------ccattgcgggtataaagcttgctcgatcgggtcaaagc 92  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  11843139 acatgacacagcgctccaaggcggagcgtttggagaaagcagctgaagcgggcagccgggcaccattgcgggtataaagcttgctcgatcgggtcaaagc 11843238  T
Q  93 ggacgcttttcacttaaaaccgtttttaggccatttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11843239 ggacgcttttcacttaaaaccgtttttaggccatttttgtaatttttaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacac 11843338  T
Q  193 aacttcttcatcgtacaaac 212  Q
    ||||||||||||||||||||    
T  11843339 aacttcttcatcgtacaaac 11843358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 3288595 - 3288486
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  3288595 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 3288496  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  3288495 ttcatcgtac 3288486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 48826802 - 48826914
Alignment:
Q  101 ttcacttaaaaccgtttttaggccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttct 199  Q
    |||||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  48826802 ttcacttaaaaccgttttaaagtcatttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaatacaacttct 48826901  T
Q  200 tcatcgtacaaac 212  Q
    |||||||||||||    
T  48826902 tcatcgtacaaac 48826914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 33516533 - 33516424
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  33516533 ttcatttaaaaccgttttaagggtcattttggtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 33516434  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  33516433 ttcatcgtac 33516424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 43613833 - 43613918
Alignment:
Q  124 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 208  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  43613833 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 43613918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 46067301 - 46067201
Alignment:
Q  106 ttaaaaccgtttttag-gccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcat 203  Q
    ||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||    
T  46067301 ttaaaaccgttttaagtgtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcat 46067202  T
Q  204 c 204  Q
    |    
T  46067201 c 46067201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 48826702 - 48826755
Alignment:
Q  12 cgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggt 65  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48826702 cgctccaaggcggagcgtttggagaaagcggctgaagcgggcgcaattgcgggt 48826755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 11591464 - 11591570
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||  || || |||||||    
T  11591464 ttcatttaaaaccgttttaagggtcatttttgtaatttttaaaaccctaactattactcttctcca-cagaaccaaatacacagccacagactcaacttc 11591562  T
Q  199 ttcatcgt 206  Q
    ||| ||||    
T  11591563 ttcttcgt 11591570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 11591350 - 11591409
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||| ||| ||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  11591350 gacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 11591409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33516650 - 33516591
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||| ||| ||| |||||||||||||||||||||| |||||| ||||| ||||||||    
T  33516650 gacacagtgcttcaacgcggagcgtttggagaaagcggatgaagcaggcgcaattgcggg 33516591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 48236161 - 48236288
Alignment:
Q  88 aaagcggacgcttttcacttaaaaccgtttttagg--ccatttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagct 184  Q
    ||||||| ||||||||||||||| ||||||| |||  |  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  48236161 aaagcgggcgcttttcacttaaacccgttttaagggtcattttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagcc 48236260  T
Q  185 gcaaacgcaacttcttcatcgtacaaac 212  Q
    |||||| ||||||||||||| |||||||    
T  48236261 gcaaacacaacttcttcatcatacaaac 48236288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 41055587 - 41055478
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  41055587 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 41055488  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  41055487 ttcatcgtac 41055478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 55682033 - 55682142
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  55682033 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 55682132  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  55682133 ttcatcgtac 55682142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 375059 - 374949
Alignment:
Q  100 tttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaactt 197  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||  ||||| ||||||    
T  375059 tttcacttaaaaccgttttaagggtcaattttgtaattttcaaaaccataactattactcttctctatcataaccaaatacacagcctcaaacacaactt 374960  T
Q  198 cttcatcgtac 208  Q
    |||||||||||    
T  374959 cttcatcgtac 374949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 7199255 - 7199364
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||  ||||| |||||||    
T  7199255 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctcctccagaaccaaatacacagccacaaactcaacttc 7199354  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  7199355 ttcatcgtac 7199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 51470181 - 51470076
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  51470181 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 51470082  T
Q  199 ttcatc 204  Q
    ||||||    
T  51470081 ttcatc 51470076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 49811683 - 49811796
Alignment:
Q  101 ttcacttaaaaccgtttttagg--ccatttttgtaattttcaaaacct-aactattactcttctccatcagaaccaaatacacagctgcaaacgcaactt 197  Q
    |||||||||||||||||| |||  |  ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||  ||||||    
T  49811683 ttcacttaaaaccgttttaagggtcattttttgtaattttcaaaacgttaactat-actcttctccatcagaaccaaatacacaactgcaaaaacaactt 49811781  T
Q  198 cttcatcgtacaaac 212  Q
    |||||||||||||||    
T  49811782 cttcatcgtacaaac 49811796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 37517550 - 37517466
Alignment:
Q  124 catttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 208  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || | |||||||||||||  ||||| |||||||||||||||||    
T  37517550 catttttgtaattttaaaaccctaactattactcttctccaccatagccaaatacacagccacaaactcaacttcttcatcgtac 37517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 37521766 - 37521682
Alignment:
Q  124 catttttgtaattttcaaaacctaactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 208  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || | |||||||||||||  ||||| |||||||||||||||||    
T  37521766 catttttgtaattttaaaaccctaactattactcttctccaccatagccaaatacacagccacaaactcaacttcttcatcgtac 37521682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 7199127 - 7199186
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  7199127 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 7199186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 20790135 - 20790194
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||    
T  20790135 gacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 20790194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 37517692 - 37517633
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  37517692 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 37517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 37521908 - 37521849
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  37521908 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggg 37521849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 55681905 - 55681963
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgg 63  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||||    
T  55681905 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgg 55681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 375158 - 375115
Alignment:
Q  12 cgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 55  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  375158 cgctccaacgcggagcgtttggcgaaagcggctgaagcgggcgc 375115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 42491054 - 42491101
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcggg 52  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||    
T  42491054 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcggg 42491101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 51470305 - 51470250
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    |||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||    
T  51470305 cagcgctccaacacggagcgtttggagaaagcggatgaagcgggcacaattgcggg 51470250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 42872710 - 42872601
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    ||||||||||||| |||| |||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  42872710 ttcacttaaaaccattttaagggtcttttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttc 42872611  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  42872610 ttcatcgtac 42872601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 52004947 - 52004838
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  52004947 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 52004848  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  52004847 ttcatcgtac 52004838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 52539329 - 52539438
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  52539329 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 52539428  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  52539429 ttcatcgtac 52539438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 20010833 - 20010724
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||  ||||| |||||||    
T  20010833 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagagccaaatacacagccacaaactcaacttc 20010734  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  20010733 ttcatcgtac 20010724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 42872835 - 42872772
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagc 72  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  42872835 cagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagc 42872772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 52005075 - 52004978
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  52005075 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 52004978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 52789552 - 52789510
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgg 51  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  52789552 cagcgctacaaggcggagcgtttggagaaagcgggtgaagcgg 52789510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 36392452 - 36392495
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcggg 52  Q
    ||||||||||||||||| | |||||||||||||| |||||||||    
T  36392452 cagcgctccaaggcggaacatttggagaaagcgggtgaagcggg 36392495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 52539227 - 52539273
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 55  Q
    ||||||| ||| |||||||||||||||||||||| |||| |||||||    
T  52539227 cagcgctgcaacgcggagcgtttggagaaagcggatgaaacgggcgc 52539273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 20010957 - 20010905
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgc 61  Q
    |||||||||||  |||||| |||||||||||||  |||||||||||| |||||    
T  20010957 cagcgctccaacacggagcatttggagaaagcgtatgaagcgggcgcaattgc 20010905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 7905 - 7988
Alignment:
Q  126 tttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  7905 tttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttcttcatcgtac 7988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 7754 - 7817
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagc 72  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  7754 cagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagc 7817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 18740 - 18849
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  18740 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 18839  T
Q  199 ttcatcgtac 208  Q
    ||||||||||    
T  18840 ttcatcgtac 18849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 18616 - 18671
Alignment:
Q  9 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||    
T  18616 cagcgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcggg 18671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 108 - 23
Alignment:
Q  124 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 208  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  108 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 23  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 38566624 - 38566733
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  38566624 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 38566723  T
Q  199 ttcatcgtac 208  Q
    |||| |||||    
T  38566724 ttcaccgtac 38566733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 38566496 - 38566593
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    |||||||  |||||| |||||||||||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  38566496 gacacagttctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 38566593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 37369724 - 37369639
Alignment:
Q  124 catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcatcgtac 208  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  37369724 catttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtac 37369639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 41992333 - 41992438
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||  ||||| |||||||    
T  41992333 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccataaccaaatacacagccacaaactcaacttc 41992432  T
Q  199 ttcatc 204  Q
    ||||||    
T  41992433 ttcatc 41992438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 37369876 - 37369779
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  37369876 gacacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 37369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 41992227 - 41992277
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgc 55  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  41992227 gacacagcgctccaacgcggagtgtttggagaaagcggatgaagcgggcgc 41992277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 33458469 - 33458361
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||  ||||| |||||||    
T  33458469 ttcatttaaaaccgttttgagggtcatttttgtaattttcaaaaccctgactattactcttctccaccagaaccaaatacacagccacaaactcaacttc 33458370  T
Q  199 ttcatcgta 207  Q
    |||||||||    
T  33458369 ttcatcgta 33458361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 21472731 - 21472845
Alignment:
Q  4 tgacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||  || |||| | |||| ||||||||||||||    
T  21472731 tgacgcagcgctccaaggcggagcgtttggagaaagcggctgaagcggtcgcgattgcgggtatcaagcgggcgcgatgctggtc-aagcggacgctttt 21472829  T
Q  103 cacttaaaaccgtttt 118  Q
    | ||||||||| ||||    
T  21472830 cccttaaaaccatttt 21472845  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 33458597 - 33458500
Alignment:
Q  5 gacacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt 102  Q
    |||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||| | |||||  || |||| ||||||||||||| |||||||    
T  33458597 gacacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt 33458500  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 34479049 - 34478944
Alignment:
Q  101 ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttc 198  Q
    |||| ||||||||||||| |||  |||||||||||||||||||||| || |||||||||||||||| | ||| |||||||||| |  ||||| |||||||    
T  34479049 ttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctacctattactcttctccaccggaatcaaatacacatccacaaactcaacttc 34478950  T
Q  199 ttcatc 204  Q
    ||||||    
T  34478949 ttcatc 34478944  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 34479169 - 34479118
Alignment:
Q  13 gctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 64  Q
    ||||||| |||||||||||||||||||||| |||||| | ||| ||||||||    
T  34479169 gctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcggg 34479118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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