View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_25 (Length: 275)

Name: NF10722_low_25
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_25
NF10722_low_25
[»] chr8 (2 HSPs)
chr8 (1-221)||(9264144-9264367)
chr8 (217-258)||(9264402-9264443)
[»] chr3 (4 HSPs)
chr3 (1-221)||(11775747-11775970)
chr3 (1-131)||(26378240-26378370)
chr3 (71-131)||(22452456-22452516)
chr3 (217-258)||(11776005-11776046)
[»] chr6 (2 HSPs)
chr6 (1-115)||(17350968-17351082)
chr6 (214-258)||(17350863-17350907)
[»] chr2 (4 HSPs)
chr2 (7-215)||(9746434-9746645)
chr2 (7-215)||(36769793-36770004)
chr2 (1-136)||(31319888-31320023)
chr2 (71-134)||(35318792-35318855)
[»] chr4 (3 HSPs)
chr4 (118-221)||(33471408-33471514)
chr4 (217-258)||(33471549-33471590)
chr4 (70-132)||(14155926-14155988)
[»] chr7 (2 HSPs)
chr7 (71-134)||(4183316-4183379)
chr7 (69-132)||(32929295-32929358)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9264144 - 9264367
Alignment:
Q  1 tcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9264144 tcattccccaatgttagttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 9264243  T
Q  101 atgatgagattttggggcaagacaagagaaaggtgcaaat---tgatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcag 197  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||| | || |||||||||||||||||||||||||||||| ||||||||||||||    
T  9264244 atgatgagattttggggcaagacaagagaaaggtgcaaattaatgatggtcctataaataaatcagttgcctgtatgaaagatggtaaagccttgagcag 9264343  T
Q  198 gttctggggagatgaagactctga 221  Q
    ||||||||||||||||||| ||||    
T  9264344 gttctggggagatgaagacactga 9264367  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 9264402 - 9264443
Alignment:
Q  217 tctgaagtgaataaagccaagtttccagatgctactaagtac 258  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  9264402 tctgaagtgaataaagccaagtctccatatgctactaagtac 9264443  T

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Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11775747 - 11775970
Alignment:
Q  1 tcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11775747 tcattccccaatgttacttctgtgtcatttgggaatgttagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 11775846  T
Q  101 atgatgagattttggggcaagacaagagaaaggtgcaa---attgatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcag 197  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||| | || ||||| |||||||||||||||||||||||| ||||||||||||||    
T  11775847 atgatgagattttggggcaagacaagagaaaggtgcaaattattgatggtcctataaatatatcagttgcctgtatgaaagatggtaaagccttgagcag 11775946  T
Q  198 gttctggggagatgaagactctga 221  Q
    ||||||||||||||||||| ||||    
T  11775947 gttctggggagatgaagacactga 11775970  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26378370 - 26378240
Alignment:
Q  1 tcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 100  Q
    |||||||||||||||||| |||||||| |||   |||||||||| || |||||| |||| ||  | | || ||||||||||||||| |||||||  |||     
T  26378370 tcattccccaatgttactgctgtgtcacttgatgatgctagggatcctatttttcatgataatttgacaccgcagcctatcatttctcccatcattacta 26378271  T
Q  101 atgatgagattttggggcaagacaagagaaa 131  Q
     |||||||||||| |||||||||||||||||    
T  26378270 ctgatgagattttagggcaagacaagagaaa 26378240  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 22452516 - 22452456
Alignment:
Q  71 tgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaa 131  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| |||| ||| ||||||||    
T  22452516 tgcagcctatcatttcccccatcactactaatgatgagattttagggccagataagagaaa 22452456  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 11776005 - 11776046
Alignment:
Q  217 tctgaagtgaataaagccaagtttccagatgctactaagtac 258  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  11776005 tctgaagtgaataaagccaagtctccatatgctactaagtac 11776046  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 17351082 - 17350968
Alignment:
Q  1 tcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 100  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  17351082 tcattccccgatgttacttctgtgtcatttgggaatactatggactccattttttataagaacatcatactgcagcctatcatttcacccatcaccactt 17350983  T
Q  101 atgatgagattttgg 115  Q
    |||||||||||||||    
T  17350982 atgatgagattttgg 17350968  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 17350907 - 17350863
Alignment:
Q  214 gactctgaagtgaataaagccaagtttccagatgctactaagtac 258  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  17350907 gactctgaagtgaataaagccaagtttccagatgctgctaagtac 17350863  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 9746434 - 9746645
Alignment:
Q  7 cccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccacttatgatg 106  Q
    ||||||| ||||||||||||||||||| ||| || |||||| ||||||||||||| ||  ||| ||||||||||||||||||| ||||||||| ||||||    
T  9746434 cccaatgctacttctgtgtcatttggggatgttatggaccctatttttgatgagaccactatattgcagcctatcatttcacctatcaccactaatgatg 9746533  T
Q  107 agattttggggcaagacaagagaaaggtgcaaat---tgatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcaggttctg 203  Q
    |||| || ||||||||||||| ||||||||||||   || ||| | |||||||||||||| ||| ||| ||  |||||| |||| |||||||| ||| ||    
T  9746534 agatattagggcaagacaagaaaaaggtgcaaattactgctggtcctaaaaataaatcagctgcatgtttgggagatggtaaagtcttgagcaagttatg 9746633  T
Q  204 gggagatgaaga 215  Q
    ||| ||||||||    
T  9746634 gggtgatgaaga 9746645  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 36769793 - 36770004
Alignment:
Q  7 cccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccacttatgatg 106  Q
    ||||||| ||||||||||||||||||| ||| || |||||| ||||||||||||| ||  ||| ||||||||||||||||||| ||||||||| ||||||    
T  36769793 cccaatgctacttctgtgtcatttggggatgttatggaccctatttttgatgagaccactatattgcagcctatcatttcacctatcaccactaatgatg 36769892  T
Q  107 agattttggggcaagacaagagaaaggtgcaaat---tgatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcaggttctg 203  Q
    |||| || ||||||||||||||||||||||||||   || ||| | |||||||||||||| ||| ||| | | |||||| |||| |||||||| ||| ||    
T  36769893 agatattagggcaagacaagagaaaggtgcaaattactgctggtcctaaaaataaatcagctgcatgtttaagagatggtaaagtcttgagcaagttatg 36769992  T
Q  204 gggagatgaaga 215  Q
    ||| || |||||    
T  36769993 gggtgaggaaga 36770004  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31319888 - 31320023
Alignment:
Q  1 tcattccccaatgttacttctgtgtcatttgggaatgctagggaccccatttttgatgagaacatcatactgcagcctatcatttcacccatcaccactt 100  Q
    ||||||||||||| || | ||||||||||||| || |||||||| ||  ||| ||||   | ||||| | ||||||| |||| | | || |||||||||     
T  31319888 tcattccccaatgctattgctgtgtcatttggtaaggctagggatcctttttatgatactaccatcacattgcagcccatcactacccctatcaccactc 31319987  T
Q  101 atgatgagattttggggcaagacaagagaaaggtgc 136  Q
    |||||||||| || || ||||| |||| ||||||||    
T  31319988 atgatgagatattaggacaagataagaaaaaggtgc 31320023  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 35318792 - 35318855
Alignment:
Q  71 tgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaaggt 134  Q
    |||||||||||||||| || ||||| ||| ||||||||||||| |||| ||| || ||||||||    
T  35318792 tgcagcctatcatttcccctatcactactaatgatgagattttagggccagataaaagaaaggt 35318855  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 33471408 - 33471514
Alignment:
Q  118 caagacaagagaaaggtgcaaatt---gatggccttaaaaataaatcagttgcctgtatgaaagatggcaaagccttgagcaggttctggggagatgaag 214  Q
    ||||||||||||||||||||||||   ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33471408 caagacaagagaaaggtgcaaattactgatggccctataaataaatcagttgcctgtatgaaagatggtaaagccttgagcaggttctggggagatgaag 33471507  T
Q  215 actctga 221  Q
    || ||||    
T  33471508 acactga 33471514  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 33471549 - 33471590
Alignment:
Q  217 tctgaagtgaataaagccaagtttccagatgctactaagtac 258  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  33471549 tctgaagtgaataaagtcaagtttccagatgctactaagtac 33471590  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 14155926 - 14155988
Alignment:
Q  70 ctgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaag 132  Q
    ||||||||||||||||| |||||||| |||  ||||||| |||| |||||||| |||||||||    
T  14155926 ctgcagcctatcatttctcccatcactactattgatgagtttttagggcaagataagagaaag 14155988  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 4183379 - 4183316
Alignment:
Q  71 tgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaaggt 134  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| |||| ||| |||||||||||    
T  4183379 tgcagcctatcatttcccccatcactactaatgatgagattttagggctagataagagaaaggt 4183316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 32929358 - 32929295
Alignment:
Q  69 actgcagcctatcatttcacccatcaccacttatgatgagattttggggcaagacaagagaaag 132  Q
    |||||||||||||||||| ||||| || ||| |||||||||| || ||| |||||| |||||||    
T  32929358 actgcagcctatcatttctcccataactactaatgatgagatgttagggaaagacaggagaaag 32929295  T

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