View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_28 (Length: 271)
Name: NF10722_low_28
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6206879 - 6206639
Alignment:
| Q |
1 |
tcaatgctttatgtgtaagtataaaattatttacttgttttgttatttaatttaataatgcagtggtgatttagatgggcgtgttcccataacctcaaca |
100 |
Q |
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| T |
6206879 |
tcaatgctttatgtataagtataaaattatttacttgttttgttatttaatttaataatgcagtggtgatttagatgggcgtgttcccataacctcaaca |
6206780 |
T |
|
| Q |
101 |
aagtattcaataaattccttaaaactacctgtagatacagcatggcgtccatggtacactggaaaa-aggtaaacgactattactatttgaatgtttggt |
199 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
6206779 |
aagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccatggtacactggaaaagaggtaaacgactattactatgtgaatgtttggt |
6206680 |
T |
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| Q |
200 |
ttcactgtgaatttgccagaatcacttactacgattcctac |
240 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| |
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| T |
6206679 |
ttcattgtgaatttgtcagaatcacttactacgattcctac |
6206639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 6177033 - 6176844
Alignment:
| Q |
35 |
ttgttttgttatttaatttaataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtag |
134 |
Q |
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| T |
6177033 |
ttgttttgttatctaat--aataatgcagtggagatatagatggacgtgttcctataacctcaacaaagtattcaataaattccttaaaactgcctgtgc |
6176936 |
T |
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| Q |
135 |
atacagcatggcgtccatggtacactggaaaa-aggtaaacgactattactatttgaatgtttggtttcactgtgaatttgccagaatcact |
225 |
Q |
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| T |
6176935 |
atacagcatggcgtccatggtacactggaaaagaggtaaaggaccattactaagtcaatgtttggtatcactgtgaatatgccataatcact |
6176844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 6214523 - 6214410
Alignment:
| Q |
53 |
taataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtagatacagcatggcgtccat |
152 |
Q |
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|||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
6214523 |
taataatgcagtggagatatagatggacgtgttcccataatctcaacaaagtattcaataaattccttaaaactacatgtacgtacagcatggcgtccat |
6214424 |
T |
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| Q |
153 |
ggtacactggaaaa |
166 |
Q |
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|||||||||||||| |
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| T |
6214423 |
ggtacactggaaaa |
6214410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 6700441 - 6700485
Alignment:
| Q |
180 |
ttactatttgaatgtttggtttcactgtgaatttgccagaatcac |
224 |
Q |
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|||||||||| ||||||||||| || ||||||||| ||||||||| |
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| T |
6700441 |
ttactatttgtatgtttggtttgacggtgaatttggcagaatcac |
6700485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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