View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_29 (Length: 266)
Name: NF10722_low_29
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 60 - 247
Target Start/End: Complemental strand, 27969866 - 27969679
Alignment:
| Q |
60 |
tctatatttatttataacacttgcgattatcattagtagcatgaaataaatgttaccagtttatgtttcttgtagcatgcaaagtatgttactattttgt |
159 |
Q |
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| T |
27969866 |
tctatatttatttataacacttgcgattatcattagtagcatgaaataaatgttaccactttatgtttcttgtagcatgcaaagtatgttactattttgt |
27969767 |
T |
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| Q |
160 |
atacaaaagttgattagctattgcgtttttgtagttaatccacctcatttgcctaataaaacttgaaaatatcaaccaaagtttaagc |
247 |
Q |
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| T |
27969766 |
atacaaaagttgattagctattgagtttttgtagttaatccaccgcatttgcctaataaaacttgaaaatatcaaccaaagtttaagc |
27969679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 27970204 - 27970154
Alignment:
| Q |
18 |
gcagagaaagggaagggtgccaaatcatattgtatacatt-catctatatt |
67 |
Q |
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| T |
27970204 |
gcagagaaagggaagggtgccaaatcatattgtatacattacatctatatt |
27970154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 36068667 - 36068529
Alignment:
| Q |
114 |
accagtttatgtttcttgtagcatgcaaagtatgttactattttgtatac--------aaaagttgattagctat-tgcgtttttgtagttaatccacct |
204 |
Q |
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| T |
36068667 |
accactttatgtttcttgtagcatgcaaaatatgttactattttgtatacattataaaaaaagttgattagatataagaatttttgttgttaattcaccg |
36068568 |
T |
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| Q |
205 |
catttgcctaataaaacttgaaaatatcaaccaaagttt |
243 |
Q |
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| T |
36068567 |
cattggcctattaaaacttcaaaatatcaaccaaagttt |
36068529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 27556840 - 27556750
Alignment:
| Q |
74 |
taacacttgcgattatcattagtagcatgaaataaatgttaccag--tttatgtttcttgtagcatgcaaagtatgttactattttgtata |
162 |
Q |
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| T |
27556840 |
taacacttgagtttattatatgtaccatgaaataaatgttaccacactttatgtttcttgtaacatgcaaaatatgttactattttgtata |
27556750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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