View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_3 (Length: 447)
Name: NF10722_low_3
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 8801137 - 8801541
Alignment:
| Q |
7 |
taactttctactttaattttgtgaattactattaattaactcaacaaagttttctctttta---aattgaaaccaatatgacgttgctaagttagatagc |
103 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||| |
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| T |
8801137 |
taactttctactttaattttgtgaatta---ttaattaactcaacaaagttttatcttttactaaattgaacccaatatgacgttgctatgttagctagc |
8801233 |
T |
|
| Q |
104 |
atgcatacaaataatcagtagtaattcgaaataatttactactgcagaaaaagctagtgctgtagccaagttaataaagctgtaaagtatgtgggacagt |
203 |
Q |
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||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8801234 |
atgcata----taatcagtagtaattcgagataatttact---gcagaaaaagctagtgctgtagctaagttaataaagctgtaaagtatgtgggacagt |
8801326 |
T |
|
| Q |
204 |
ccgaatgtctcttcctcnnnnnnnctttgatgacttgctaatctatttgtagcactagcatcatagtccatagatatctatatatccttcctcatcgtcc |
303 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8801327 |
ccgaatgtctcttcctctttttttctttgatgacttgctaatctatttgtagcactagca-------ccatagatatctatatatccttcctcatcgtcc |
8801419 |
T |
|
| Q |
304 |
acaataaaggcatagacttagcatcacttcccgtaaaaataccgtataaaagcagctccatcaggttacgtacttattgtcgcatcccattgtcccccct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8801420 |
acaataaaggcatagacttagcatcacttcccgtaaaaataccgtataaaagcagctccatcaggttacgtacttattgtcgcatcccattgtcccccct |
8801519 |
T |
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| Q |
404 |
cccatccggtttatactcttca |
425 |
Q |
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|||||||||||||||||||||| |
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| T |
8801520 |
cccatccggtttatactcttca |
8801541 |
T |
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