View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_30 (Length: 262)
Name: NF10722_low_30
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 7627372 - 7627603
Alignment:
| Q |
20 |
taaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggac |
119 |
Q |
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| T |
7627372 |
taaaaccaccatctccagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttgaac |
7627471 |
T |
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| Q |
120 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627472 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaaggtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
7627571 |
T |
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| Q |
220 |
agaatcttctccaccatagttgtttttccttt |
251 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7627572 |
agaatcttctccaccatagttgtttttccttt |
7627603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 11356846 - 11356770
Alignment:
| Q |
139 |
tcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatgga |
215 |
Q |
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|||| |||||| ||| | ||||| |||||||||||||||||| ||| |||| ||||| ||||||| | |||||||| |
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| T |
11356846 |
tcatcaatggataaaattgtaacatcattggattcttctatgacgcacaccaaatagtcgaatctttatgtcatgga |
11356770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 8921399 - 8921168
Alignment:
| Q |
20 |
taaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggac |
119 |
Q |
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| T |
8921399 |
taaaaccaccatctccagctcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcatgcttcttgaac |
8921300 |
T |
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| Q |
120 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
219 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921299 |
aagaaaattgctttgcagttcattaatggaaaaagcggtaacatcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
8921200 |
T |
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| Q |
220 |
agaatcttctccaccatagttgtttttccttt |
251 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
8921199 |
agaatcttctccaccatagttttttttccttt |
8921168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 35372092 - 35372221
Alignment:
| Q |
101 |
tcattcttgcttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaa |
200 |
Q |
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|||||||||||||||| ||||| || ||| ||||||||||| ||| |||| ||||||||| ||||| ||||||||||| | || |||||||||||||| |
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| T |
35372092 |
tcattcttgcttcttgcacaagtaatctgcattgcagttcatcaatagaaagagtggtaacatcattagattcttctatagtacacaccacatagttgaa |
35372191 |
T |
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| Q |
201 |
tcttgaagtcatggacctaagaatcttctc |
230 |
Q |
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|||||| |||||||| |||| ||||||||| |
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| T |
35372192 |
tcttgatgtcatggatctaaaaatcttctc |
35372221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 24659053 - 24659113
Alignment:
| Q |
170 |
attcttctatggagcaaaccacatagttgaatcttgaagtcatggacctaagaatcttctc |
230 |
Q |
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|||||||||| ||| | |||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
24659053 |
attcttctatagagtagaccacatagttgaatcttgatgtcatggatatgagaatcttctc |
24659113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 10784303 - 10784361
Alignment:
| Q |
157 |
gtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatgga |
215 |
Q |
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||||| ||||| |||||||| || |||||||| ||||| ||||||||||| |||||||| |
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| T |
10784303 |
gtaacatcatttgattcttcaattgagcaaacaacataattgaatcttgatgtcatgga |
10784361 |
T |
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