View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_35 (Length: 250)
Name: NF10722_low_35
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29553617 - 29553372
Alignment:
| Q |
1 |
catatgatgtataaattaacattgtcaccgttcacccttcttcctttaatttattttttcctctatctaaacaaattagggttcatagaaaacccttct- |
99 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29553617 |
catatgatgtgtaaattaacattgtcacagttcacccttcttcctttaatttattttttcctctatctaaacaaattagggttcatagaaaacccttctt |
29553518 |
T |
|
| Q |
100 |
--cccaaattaaactccatttataatattacagcatgcaaattcaatttctataaagttcattccaacccatcttcttctcaattttattctagcgcaac |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29553517 |
ctcccaaattaaactccatttataatattacagcatgcaaattcaatttctataaagttcattccaacccatcttcttctcaattttattctagcccaac |
29553418 |
T |
|
| Q |
198 |
tccatttaataatacccataattatgtttttctcaatttcatctct |
243 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29553417 |
tccatttaataatacccataattctgtttttctcaatttcatctct |
29553372 |
T |
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