View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_38 (Length: 242)
Name: NF10722_low_38
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12815022 - 12815253
Alignment:
| Q |
1 |
catcgggtgacacccgatgtaactaaaggtgaagtgaaaaccctgatgtgaaatgtatcttttctagtagtgccttttcaatttattctttaacttccca |
100 |
Q |
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| T |
12815022 |
catcgggtgacacccgatgtaactaaaggtgaagtgaaaaccctgatgtgaaatgtatcttttttagtagtgccttttcaatttattctttaacttccca |
12815121 |
T |
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| Q |
101 |
------cccaaccccaagccattcttatatcacgctacatttttccaatttaaaggagaaaatagaagatgtaattaaaattatggccgtaaat-aaaaa |
193 |
Q |
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| T |
12815122 |
cccaaccccaaccccaacccattcttatatcacgctacatttttccaatttagaggagaaaatagaagatataattaaaattatggccgtaaataaaaaa |
12815221 |
T |
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| Q |
194 |
ca--gagagatttaataaaaatattatcgaaa |
223 |
Q |
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|| ||||||||||||||||||||||| |||| |
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| T |
12815222 |
cattgagagatttaataaaaatattattgaaa |
12815253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 31713483 - 31713445
Alignment:
| Q |
34 |
gtgaaaaccctgatgtgaaatgtatcttttctagtagtg |
72 |
Q |
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| T |
31713483 |
gtgaaaaccctgatgtcaaatgtatattttctagtagtg |
31713445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 2598817 - 2598855
Alignment:
| Q |
34 |
gtgaaaaccctgatgtgaaatgtatcttttctagtagtg |
72 |
Q |
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|||||||||||||||| |||||||| ||||||||||||| |
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| T |
2598817 |
gtgaaaaccctgatgtcaaatgtatattttctagtagtg |
2598855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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