View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_4 (Length: 436)

Name: NF10722_low_4
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_4
NF10722_low_4
[»] chr4 (5 HSPs)
chr4 (215-392)||(52597312-52597489)
chr4 (108-222)||(52597800-52597914)
chr4 (1-93)||(52598017-52598109)
chr4 (358-418)||(1143562-1143621)
chr4 (374-418)||(42433538-42433582)
[»] chr2 (3 HSPs)
chr2 (375-421)||(4622932-4622978)
chr2 (358-421)||(15675724-15675786)
chr2 (356-418)||(20965017-20965078)
[»] chr7 (6 HSPs)
chr7 (373-418)||(38026396-38026441)
chr7 (373-421)||(38032561-38032609)
chr7 (374-421)||(43126888-43126935)
chr7 (374-418)||(7845504-7845548)
chr7 (373-421)||(21237112-21237160)
chr7 (373-421)||(30604241-30604289)
[»] chr8 (2 HSPs)
chr8 (373-421)||(33358991-33359039)
chr8 (375-418)||(43953613-43953656)
[»] chr6 (1 HSPs)
chr6 (373-421)||(28590515-28590563)
[»] chr5 (2 HSPs)
chr5 (375-421)||(32903439-32903485)
chr5 (373-421)||(15921648-15921696)
[»] chr3 (3 HSPs)
chr3 (373-415)||(37826908-37826950)
chr3 (380-421)||(26041626-26041667)
chr3 (373-421)||(44790940-44790988)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 215 - 392
Target Start/End: Complemental strand, 52597489 - 52597312
Alignment:
Q  215 taccattctatgcatgcttgactcgaacaataattgagtcatatatttcatacttgtgtggatcaacaacaatctaaaagataaacatgcactgcaatct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52597489 taccattctatgcatgcttgactcgaacaataattgagtcatatatttcatacttgtgtggatcaacaacaatctaaaagataaacatgcactgcaatct 52597390  T
Q  315 ggcctctcgatattatataaagatacttagcttgctccgtcattagggatgtcaatgcggtacggatagtatgatatc 392  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52597389 ggcctctcgatattatataaagatacttggcttgctccgtcattagggatgtcaatgcggtacggatagtatgatatc 52597312  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 52597914 - 52597800
Alignment:
Q  108 acatgttggggaagcttggtggaagatgattggactgtggaagtggattgcttcaaatttgttgcatgcacatcacgctagagacaaaattttagctcta 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52597914 acatgttggggaagcttagtggaagatgattggactgtggaagtggattgcttcaaatttgttgcatgcacatcacgctagagacaaaattttagctcta 52597815  T
Q  208 cgacgcataccattc 222  Q
    |||||||||||||||    
T  52597814 cgacgcataccattc 52597800  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 52598109 - 52598017
Alignment:
Q  1 agcagagacgtctgatatcaaatacgaaaaattcttcatattctgcttttttcgatttctaaattccgaaaatacctaacaatttgttttgga 93  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52598109 agcagagacgtttgatatcaaatacgaacaattcttcatattctgcttttttcgatttctaaattccgaaaatacctaacaatttgttttgga 52598017  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 1143621 - 1143562
Alignment:
Q  358 tagggatgtcaatgcggtacggatagtatgatatccgcccccgccccattggataaatatg 418  Q
    |||||||||||||| |||||  ||||||||||| ||| |||| |||| |||||||||||||    
T  1143621 tagggatgtcaatg-ggtactcatagtatgatacccgtccccaccccgttggataaatatg 1143562  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 42433582 - 42433538
Alignment:
Q  374 gtacggatagtatgatatccgcccccgccccattggataaatatg 418  Q
    |||| |||||||||||||||| | |||||| ||||||||||||||    
T  42433582 gtacagatagtatgatatccgtctccgccctattggataaatatg 42433538  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 4622978 - 4622932
Alignment:
Q  375 tacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||    
T  4622978 tacggatagtatgatacccgtctccgccccattggataaatatgata 4622932  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 15675724 - 15675786
Alignment:
Q  358 tagggatgtcaatgcggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||||||| |||| ||||| ||||||| ||| | |||||| |||||||||||||||||    
T  15675724 tagggatgtcaatg-ggtatggataatatgatacccgtcaccgccctattggataaatatgata 15675786  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 20965017 - 20965078
Alignment:
Q  356 attagggatgtcaatgcggtacggatagtatgatatccgcccccgccccattggataaatatg 418  Q
    |||||||||||||||| |||| || |||||| ||||||| ||||||| | |||||||||||||    
T  20965017 attagggatgtcaatg-ggtaagggtagtattatatccgtccccgcctcgttggataaatatg 20965078  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 38026441 - 38026396
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatg 418  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||    
T  38026441 ggtacgggtagtatgatatccgtccccgccccgttggataaatatg 38026396  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 38032609 - 38032561
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    ||||| |||||||||||||||| ||||||||| |||| |||||||||||    
T  38032609 ggtacagatagtatgatatccgtccccgccccgttgggtaaatatgata 38032561  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 43126888 - 43126935
Alignment:
Q  374 gtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    ||||||||||||||||||||| | ||||||||||| ||||| ||||||    
T  43126888 gtacggatagtatgatatccgtctccgccccattgaataaacatgata 43126935  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 7845504 - 7845548
Alignment:
Q  374 gtacggatagtatgatatccgcccccgccccattggataaatatg 418  Q
    |||||| |||||||||||||| ||||||||| |||||||| ||||    
T  7845504 gtacgggtagtatgatatccgtccccgccccgttggataattatg 7845548  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 21237160 - 21237112
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||||||||||| ||  ||||| ||| ||||||||||||||||    
T  21237160 ggtacggatagtatgatacccatccccgtcccgttggataaatatgata 21237112  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 30604289 - 30604241
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    ||||||| ||||||||||| || ||||||||| || |||||||||||||    
T  30604289 ggtacgggtagtatgatattcgtccccgccccgttagataaatatgata 30604241  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 33358991 - 33359039
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||||||||||||||| ||| ||||||||  ||||||||||||    
T  33358991 ggtacggatagtatgatatccgtccctgccccattaaataaatatgata 33359039  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Original strand, 43953613 - 43953656
Alignment:
Q  375 tacggatagtatgatatccgcccccgccccattggataaatatg 418  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||    
T  43953613 tacgggtagtatgatatccacccccaccccattggataaatatg 43953656  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 28590563 - 28590515
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||| |||||||| || |||||||| |||||||||||||||||    
T  28590563 ggtacggataatatgatatacgtccccgccctattggataaatatgata 28590515  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 32903439 - 32903485
Alignment:
Q  375 tacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||||||||||| |  |||||||| ||||||||||||||||    
T  32903439 tacggatagtatgatatctgttcccgccccgttggataaatatgata 32903485  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 15921696 - 15921648
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||| ||||||| |||  |||||||| ||||||||||||||||    
T  15921696 ggtacggataatatgatacccgttcccgccccgttggataaatatgata 15921648  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 37826908 - 37826950
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaat 415  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||    
T  37826908 ggtacgggtagtatgatatccgtccccgccccgttggataaat 37826950  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 26041626 - 26041667
Alignment:
Q  380 atagtatgatatccgcccccgccccattggataaatatgata 421  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  26041626 atagtatgatatccgtctccgccccgttggataaatatgata 26041667  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 44790940 - 44790988
Alignment:
Q  373 ggtacggatagtatgatatccgcccccgccccattggataaatatgata 421  Q
    |||||||||||||||||| ||| ||||||||| ||| ||||| ||||||    
T  44790940 ggtacggatagtatgatacccgtccccgccccgttgtataaaaatgata 44790988  T

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