View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_45 (Length: 240)

Name: NF10722_low_45
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_45
NF10722_low_45
[»] chr3 (17 HSPs)
chr3 (1-223)||(14813689-14813911)
chr3 (170-223)||(39653073-39653126)
chr3 (171-223)||(16811291-16811343)
chr3 (171-223)||(28561656-28561708)
chr3 (171-223)||(39653530-39653582)
chr3 (171-218)||(25238860-25238907)
chr3 (181-223)||(16810845-16810887)
chr3 (171-220)||(11180220-11180269)
chr3 (173-220)||(50347658-50347705)
chr3 (174-220)||(14814318-14814364)
chr3 (170-223)||(13155386-13155438)
chr3 (170-219)||(32797122-32797171)
chr3 (171-223)||(13150283-13150334)
chr3 (171-222)||(25803189-25803240)
chr3 (184-223)||(32227405-32227444)
chr3 (171-219)||(2911005-2911053)
chr3 (171-223)||(37044944-37044997)
[»] chr1 (23 HSPs)
chr1 (4-171)||(19291446-19291613)
chr1 (170-223)||(16452117-16452170)
chr1 (170-223)||(16461270-16461323)
chr1 (171-223)||(20054264-20054316)
chr1 (171-223)||(20054720-20054772)
chr1 (171-223)||(20055176-20055228)
chr1 (171-223)||(20055632-20055684)
chr1 (171-223)||(20056088-20056140)
chr1 (171-223)||(20056544-20056596)
chr1 (171-223)||(20056991-20057043)
chr1 (171-223)||(20057447-20057499)
chr1 (171-223)||(20057903-20057955)
chr1 (171-223)||(20845845-20845897)
chr1 (171-223)||(38340816-38340868)
chr1 (171-223)||(52250116-52250168)
chr1 (171-222)||(43057249-43057300)
chr1 (171-222)||(43057708-43057759)
chr1 (170-206)||(9189351-9189387)
chr1 (171-223)||(7548003-7548055)
chr1 (170-218)||(10820501-10820549)
chr1 (175-223)||(12883438-12883486)
chr1 (170-223)||(30873133-30873188)
chr1 (171-215)||(50002443-50002487)
[»] chr5 (15 HSPs)
chr5 (169-223)||(34371520-34371574)
chr5 (169-223)||(42788829-42788883)
chr5 (171-223)||(2193726-2193778)
chr5 (171-222)||(34371978-34372029)
chr5 (171-223)||(15513197-15513249)
chr5 (170-222)||(20039659-20039711)
chr5 (171-223)||(34867700-34867752)
chr5 (171-223)||(39146849-39146901)
chr5 (171-223)||(21886330-21886382)
chr5 (168-222)||(17445640-17445694)
chr5 (169-217)||(8391477-8391525)
chr5 (171-219)||(18304341-18304389)
chr5 (169-219)||(5067078-5067128)
chr5 (170-223)||(1879990-1880043)
chr5 (184-223)||(27647019-27647059)
[»] chr7 (17 HSPs)
chr7 (170-223)||(2463551-2463604)
chr7 (171-223)||(34405775-34405827)
chr7 (171-223)||(2189054-2189106)
chr7 (171-223)||(10430673-10430725)
chr7 (171-218)||(2189510-2189557)
chr7 (171-222)||(6747783-6747834)
chr7 (171-223)||(2611836-2611888)
chr7 (168-223)||(3305496-3305551)
chr7 (171-223)||(43233323-43233375)
chr7 (169-223)||(26957741-26957795)
chr7 (171-223)||(679727-679779)
chr7 (171-219)||(16812026-16812074)
chr7 (171-223)||(35474305-35474357)
chr7 (171-219)||(35527308-35527355)
chr7 (170-221)||(16812143-16812194)
chr7 (172-223)||(36422163-36422214)
chr7 (195-223)||(6719247-6719275)
[»] chr2 (18 HSPs)
chr2 (170-223)||(25434240-25434293)
chr2 (171-223)||(33770920-33770972)
chr2 (171-222)||(33174868-33174919)
chr2 (170-223)||(25338181-25338234)
chr2 (170-223)||(29804591-29804644)
chr2 (171-223)||(41754199-41754251)
chr2 (171-223)||(8256436-8256488)
chr2 (171-223)||(27883110-27883162)
chr2 (169-223)||(15619806-15619860)
chr2 (169-223)||(15639648-15639702)
chr2 (181-223)||(18448102-18448144)
chr2 (174-223)||(1706955-1707004)
chr2 (170-223)||(18099062-18099116)
chr2 (171-223)||(18098745-18098798)
chr2 (171-223)||(16379302-16379355)
chr2 (171-223)||(20179098-20179150)
chr2 (171-215)||(33174415-33174459)
chr2 (171-207)||(38899112-38899148)
[»] scaffold0243 (1 HSPs)
scaffold0243 (171-223)||(1130-1182)
[»] chr8 (15 HSPs)
chr8 (171-223)||(10844793-10844845)
chr8 (171-223)||(22549179-22549231)
chr8 (170-223)||(8080526-8080579)
chr8 (171-223)||(28453249-28453301)
chr8 (171-223)||(32292307-32292359)
chr8 (171-222)||(22026289-22026340)
chr8 (169-223)||(27022522-27022576)
chr8 (170-223)||(12827438-12827491)
chr8 (170-219)||(41659292-41659341)
chr8 (171-223)||(27925809-27925861)
chr8 (171-224)||(22548732-22548785)
chr8 (171-223)||(6465094-6465146)
chr8 (171-215)||(22840721-22840765)
chr8 (171-223)||(33852442-33852493)
chr8 (180-223)||(27022067-27022110)
[»] chr4 (17 HSPs)
chr4 (171-223)||(1645927-1645979)
chr4 (171-223)||(12692177-12692229)
chr4 (171-222)||(50398717-50398768)
chr4 (171-223)||(4127616-4127668)
chr4 (171-223)||(4128068-4128120)
chr4 (171-223)||(23942964-23943016)
chr4 (169-223)||(29628845-29628899)
chr4 (171-222)||(10165873-10165924)
chr4 (173-222)||(51331460-51331509)
chr4 (171-219)||(3169116-3169164)
chr4 (186-222)||(8467978-8468014)
chr4 (187-223)||(9424036-9424072)
chr4 (171-218)||(27029188-27029235)
chr4 (190-223)||(21067666-21067699)
chr4 (171-223)||(24629611-24629662)
chr4 (182-222)||(27026425-27026465)
chr4 (182-222)||(31817577-31817617)
[»] scaffold0168 (1 HSPs)
scaffold0168 (170-223)||(2651-2704)
[»] scaffold0088 (1 HSPs)
scaffold0088 (171-223)||(23583-23635)
[»] chr6 (15 HSPs)
chr6 (171-223)||(2681400-2681452)
chr6 (171-223)||(3652889-3652941)
chr6 (171-223)||(20850231-20850283)
chr6 (171-222)||(6331097-6331148)
chr6 (171-222)||(20126367-20126418)
chr6 (170-219)||(2720752-2720801)
chr6 (171-223)||(21311881-21311933)
chr6 (173-223)||(3652398-3652448)
chr6 (181-222)||(23986502-23986543)
chr6 (171-222)||(20896873-20896924)
chr6 (169-223)||(14771903-14771957)
chr6 (169-223)||(17850826-17850880)
chr6 (171-219)||(2891025-2891073)
chr6 (171-223)||(11062196-11062248)
chr6 (173-223)||(17851286-17851336)
[»] scaffold0333 (2 HSPs)
scaffold0333 (169-223)||(4469-4523)
scaffold0333 (171-223)||(4926-4978)
[»] scaffold0002 (2 HSPs)
scaffold0002 (170-223)||(151550-151602)
scaffold0002 (171-223)||(154668-154719)
[»] scaffold0664 (1 HSPs)
scaffold0664 (173-208)||(4172-4207)
[»] scaffold0047 (1 HSPs)
scaffold0047 (171-223)||(17863-17916)
[»] scaffold0391 (1 HSPs)
scaffold0391 (182-222)||(14663-14703)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14813689 - 14813911
Alignment:
Q  1 ctattaccaagttgttcgacaacatgtcctgatggatgtggaaaacccttaaaatccttcaatgttcttatgtttctttccatatgcttttcaatctcaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14813689 ctattaccaagttgttcgacaacatatcctgatggatatggaaaacccttaaaatccttcaatgttcttatgtttctttccacgtgcttttcaatctcaa 14813788  T
Q  101 ttaatgttaaattcttgatctggtcatcattgagttgtagacctgaggcattttaaataataaggtcaattgtaacacacaaggctgacgagggcgggga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14813789 ttaatgttaaattcttgatctggtcatcattgagttgtagacctgaggcattttaaataataaggtcaattgtaacacacaaggctgacgagggcgagga 14813888  T
Q  201 gtggtcgccggtgcacaaggcac 223  Q
    |||||||||||||||||||||||    
T  14813889 gtggtcgccggtgcacaaggcac 14813911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 39653073 - 39653126
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  39653073 ttgtaacacccaaggctgacgaggacggggagtggtcgccggtgcacaaggcac 39653126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 16811291 - 16811343
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  16811291 tgtaacacccaaggctgacgagggtggggagtggtcgccggtgcacaaggcac 16811343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 28561656 - 28561708
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  28561656 tgtaacacccaagactgacgagggcggggagtggtcgccggtgcacaaggcac 28561708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 39653530 - 39653582
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  39653530 tgtaacacccaaggctgacgagggtggggagtggtcgccggtgcacaaggcac 39653582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 25238907 - 25238860
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaa 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25238907 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaa 25238860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 16810845 - 16810887
Alignment:
Q  181 aaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16810845 aaggctgacgagggcggggagtggtcgccggtgcacaaggcac 16810887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 11180269 - 11180220
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaagg 220  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  11180269 tgtaacacccaaggctgaagagggcggggagtggtcgccggtgcacaagg 11180220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 50347658 - 50347705
Alignment:
Q  173 taacacacaaggctgacgagggcggggagtggtcgccggtgcacaagg 220  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  50347658 taacacccaaggctgacgagggcggggagtgatcgccggtgcacaagg 50347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 14814318 - 14814364
Alignment:
Q  174 aacacacaaggctgacgagggcggggagtggtcgccggtgcacaagg 220  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  14814318 aacacccaaggctgacgagggcggggagtggtcaccggtgcacaagg 14814364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 13155438 - 13155386
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  13155438 ttgtaacacccaatgctgacgagggcggggagt-gtcgccggtgcacaaggcac 13155386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 32797171 - 32797122
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  32797171 ttgtaacacccaaggctaacgagggcgtggagtggtcgccggtgcacaag 32797122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 13150334 - 13150283
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  13150334 tgtaacacccaaggctgatgagggcggggagt-gtcgccggtgcacaaggcac 13150283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 25803240 - 25803189
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||| ||| |||||||||||||| |||||||||||||    
T  25803240 tgtaacacccaaggctgactaggacggggagtggtcgctggtgcacaaggca 25803189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 32227444 - 32227405
Alignment:
Q  184 gctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  32227444 gctgacgagggcggggagtggtcgccagtgcacaaggcac 32227405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 2911005 - 2911053
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||| ||||  |||||||| |||||||||||||||||||||||||    
T  2911005 tgtaacacccaagattgacgaggacggggagtggtcgccggtgcacaag 2911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 37044944 - 37044997
Alignment:
Q  171 tgtaacacacaaggctgacgagggc-ggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||  |||||||||||| ||||||||||| ||||||||||||||||    
T  37044944 tgtaacacccacagctgacgagggcaggggagtggtcaccggtgcacaaggcac 37044997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 19291446 - 19291613
Alignment:
Q  4 ttaccaagttgttcgacaacatgtcctgatggatgtggaaaacccttaaaatccttcaatgttcttatgtttctttccatatgcttttcaatctcaatta 103  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  19291446 ttaccaagttgttcgacaacatatcctgatggatatggaaaacccttaaaatccttcaatgttcttatgtttctttccatgtgcctttcaatctcaatta 19291545  T
Q  104 atgttaaattcttgatctggtcatcattgagttgtagacctgaggcattttaaataataaggtcaatt 171  Q
    ||||||||||||||||||| || ||||||||||||||||||||  ||| |||||||  ||||||||||    
T  19291546 atgttaaattcttgatctgttcttcattgagttgtagacctgaatcatattaaatagcaaggtcaatt 19291613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 16452170 - 16452117
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16452170 ttgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 16452117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 16461323 - 16461270
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16461323 ttgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 16461270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20054316 - 20054264
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20054316 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20054264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20054772 - 20054720
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20054772 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20054720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20055228 - 20055176
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20055228 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20055176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20055684 - 20055632
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20055684 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20055632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20056140 - 20056088
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20056140 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20056088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20056596 - 20056544
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20056596 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20056544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20057043 - 20056991
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20057043 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20056991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20057499 - 20057447
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20057499 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 20057447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20057955 - 20057903
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  20057955 tgtaacacccaaggttgacgagggcggggagtggtcgccggtgcacaaggcac 20057903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 20845897 - 20845845
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  20845897 tgtaacacccaaggctgacgaggacggggagtggtcgccggtgcacaaggcac 20845845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 38340816 - 38340868
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  38340816 tgtaacacccaaggctgacgagggtggggagtggtcaccggtgcacaaggcac 38340868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 52250116 - 52250168
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||||||||    
T  52250116 tgtaatacccaaggctgacgagggcggggagcggtcgccggtgcacaaggcac 52250168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 43057300 - 43057249
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  43057300 tgtaacacccaaggctgacgaggacggggagtggttgccggtgcacaaggca 43057249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 43057759 - 43057708
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  43057759 tgtaacacccaaggctgaagagggcggggaatggtcgccggtgcacaaggca 43057708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 9189351 - 9189387
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtc 206  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9189351 ttgtaacacccaaggctgacgagggcggggagtggtc 9189387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 7548003 - 7548055
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| || | ||||||||||||||| ||| || ||||||||||||||||    
T  7548003 tgtaacacccaggactgacgagggcggggggtgatcaccggtgcacaaggcac 7548055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 10820501 - 10820549
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaa 218  Q
    ||||| ||| ||||||||||||||  ||| |||||||||||||||||||    
T  10820501 ttgtaccacccaaggctgacgaggatgggaagtggtcgccggtgcacaa 10820549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 12883438 - 12883486
Alignment:
Q  175 acacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||| ||||||| ||||||| || ||||||||| |||||||||||||||    
T  12883438 acactcaaggctaacgagggtggtgagtggtcgtcggtgcacaaggcac 12883486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 30873188 - 30873133
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggg--gagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  ||||||||||||||||| |  ||||||||| |||||||||||||||    
T  30873188 ttgtaacatccaaggctgacgagggcgcgtggagtggtcgtcggtgcacaaggcac 30873133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 50002487 - 50002443
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgca 215  Q
    |||||||| || || ||||||||||||||||| ||||||||||||    
T  50002487 tgtaacacccacggatgacgagggcggggagttgtcgccggtgca 50002443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 34371520 - 34371574
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34371520 attgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 34371574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 42788883 - 42788829
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42788883 attgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 42788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 2193726 - 2193778
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2193726 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 2193778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 34371978 - 34372029
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34371978 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggca 34372029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 15513249 - 15513197
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  15513249 tgtaacacccaaggctgacgaggacggggagtggtcgccggtgcacaaggcac 15513197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 20039711 - 20039659
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  20039711 ttgtaacacccaaggctgacgagggcggggaatggtcgccggtgcacaaggca 20039659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 34867700 - 34867752
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  34867700 tgtaacacccaaggctgacgagggcgaggagtagtcgccggtgcacaaggcac 34867752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 39146849 - 39146901
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  39146849 tgtaacacccaaggctgacgagggtggggagtgatcgccggtgcacaaggcac 39146901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 21886382 - 21886330
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  |||||||| |||||||| |||||||||||||||||||||||||    
T  21886382 tgtaacaccgaaggctgatgagggcggagagtggtcgccggtgcacaaggcac 21886330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 17445694 - 17445640
Alignment:
Q  168 aattgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    ||||||||||| ||||||| || ||| ||||||||||||| ||||||||||||||    
T  17445694 aattgtaacacccaaggctaacaaggacggggagtggtcgacggtgcacaaggca 17445640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 8391525 - 8391477
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcaca 217  Q
    |||||||||| ||  ||||| ||||||||||||||||||||||||||||    
T  8391525 attgtaacacccacagctgaagagggcggggagtggtcgccggtgcaca 8391477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 18304341 - 18304389
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||| |||| ||||||||| ||||||||| |||||||||||||||    
T  18304341 tgtaacacccaagactgacgaggacggggagtgatcgccggtgcacaag 18304389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 5067128 - 5067078
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||||| || |||||||||||  ||||||||||||||||||| ||||    
T  5067128 attgtaacacccatggctgacgaggatggggagtggtcgccggtgcgcaag 5067078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 1879990 - 1880043
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||  ||||||||||||| |||| || ||||||||||||| |||||||    
T  1879990 ttgtaacaccaaaggctgacgaggacgggaagcggtcgccggtgcataaggcac 1880043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 27647059 - 27647019
Alignment:
Q  184 gctgacgagggc-ggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  27647059 gctgacgagggcaggggagtggttgccggtgcacaaggcac 27647019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 2463551 - 2463604
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2463551 ttgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 2463604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 34405827 - 34405775
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34405827 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 34405775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 2189054 - 2189106
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  2189054 tgtaacactcaaggatgacgagggcggggagtggtcgccggtgcacaaggcac 2189106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 10430673 - 10430725
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  10430673 tgtaacacccaaggctgatgagggcggggagtggtcgccggtgcacaaggcac 10430725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 2189510 - 2189557
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaa 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  2189510 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaa 2189557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 6747834 - 6747783
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  6747834 tgtaacacccaaggctgacgagggcagggagtggtcgccggtgcacaaggca 6747783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 2611888 - 2611836
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  2611888 tgtaacaccaaaggctgacgagggtggggagtggtcgccggtgcacaaggcac 2611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 3305551 - 3305496
Alignment:
Q  168 aattgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||    
T  3305551 aattgtaacacataaggctgacgagggcggagagtggtcgccggtggataaggcac 3305496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 43233323 - 43233375
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||| |||||||    
T  43233323 tgtaacacccaaggctgacgagtgcgaggagtggtcgccggtgcataaggcac 43233375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 26957795 - 26957741
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||||  ||||| |||||||||||| |||||||| |||||||||||||||    
T  26957795 attgtaacaccaaaggccgacgagggcgggaagtggtcgtcggtgcacaaggcac 26957741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 679727 - 679779
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  ||||||||||||| |||||||||||||||| ||||||| ||||    
T  679727 tgtaacacctaaggctgacgaggacggggagtggtcgccgatgcacaaagcac 679779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 16812074 - 16812026
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||  |||||||||| ||||||||||||||| |||||||||||||    
T  16812074 tgtaacatccaaggctgactagggcggggagtggttgccggtgcacaag 16812026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 35474357 - 35474305
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  |||||||| ||| |||||||||||||| |||||||||||||||    
T  35474357 tgtaacacctaaggctgatgagtgcggggagtggtcgtcggtgcacaaggcac 35474305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 35527355 - 35527308
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  35527355 tgtaacac-caaggctgacgaggacggggagtggtcgtcggtgcacaag 35527308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 16812143 - 16812194
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggc 221  Q
    ||||||||  ||||| |||| ||||||||||||||| |||||||||||||||    
T  16812143 ttgtaacatccaaggttgactagggcggggagtggttgccggtgcacaaggc 16812194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 36422163 - 36422214
Alignment:
Q  172 gtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||| |||| | |||||||  ||||||||||||||||||||||||||||    
T  36422163 gtaacacccaagaccgacgaggatggggagtggtcgccggtgcacaaggcac 36422214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 6719275 - 6719247
Alignment:
Q  195 cggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||||||||||||||||||||||    
T  6719275 cggggagtggtcgccggtgcacaaggcac 6719247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 25434293 - 25434240
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25434293 ttgtaacacacaaggctgacgagggcggggagtggccgccggtgcacaaggcac 25434240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 33770920 - 33770972
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33770920 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 33770972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 33174868 - 33174919
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33174868 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggca 33174919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 25338234 - 25338181
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  25338234 ttgtaacacccaaggctgacgagggcgaggagtggtcgccggtgcacaaggcac 25338181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 29804591 - 29804644
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  29804591 ttgtaacacccaaggctgacgaggacggggagtggtcgccggtgcacaaggcac 29804644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 41754199 - 41754251
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  41754199 tgtaacacccaaggatgacgagggcggggagtggtcgccggtgcacaaggcac 41754251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 8256436 - 8256488
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  8256436 tgtaacacccaaggctgacgagggtggggagtagtcgccggtgcacaaggcac 8256488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 27883162 - 27883110
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  27883162 tgtaacatccaaggctgacgaggacggggagtggtcgccggtgcacaaggcac 27883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 15619806 - 15619860
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  15619806 attgtaacacccaagactgatgagagcggggagtggtcgccggtgcacaaggcac 15619860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 15639648 - 15639702
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  15639648 attgtaacacccaagactgatgagagcggggagtggtcgccggtgcacaaggcac 15639702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 18448144 - 18448102
Alignment:
Q  181 aaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  18448144 aaggctggcgagggcggggagtggtcgccggtgcacaaggcac 18448102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 1706955 - 1707004
Alignment:
Q  174 aacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  1706955 aacacccaaggctaacgagggcggggagtggtcgtcggtgcacaaggcac 1707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 18099116 - 18099062
Alignment:
Q  170 ttgtaacacacaaggctgacgagggc-ggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| || ||||||||||||| |||||||| |||||||||||||||||||    
T  18099116 ttgtaacacccacggctgacgagggcaggggagtgatcgccggtgcacaaggcac 18099062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 18098798 - 18098745
Alignment:
Q  171 tgtaacacacaaggctgacgagggc-ggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| || ||||||||||||| |||||||| |||||||||||||||||||    
T  18098798 tgtaacacccacggctgacgagggcaggggagtgatcgccggtgcacaaggcac 18098745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 16379302 - 16379355
Alignment:
Q  171 tgtaacacacaaggctgacgagggcg-gggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| || |||||||||| ||  |||||||||||||||||||||||||||    
T  16379302 tgtaacacccacggctgacgagagcaagggagtggtcgccggtgcacaaggcac 16379355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 20179098 - 20179150
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||| |||||||| ||||||||||||  ||||||| |||||||    
T  20179098 tgtaacacccaaggttgacgaggacggggagtggtcatcggtgcataaggcac 20179150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 33174415 - 33174459
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgca 215  Q
    ||||| || ||||||| |||| |||||||||||||||||||||||    
T  33174415 tgtaatacccaaggctaacgaaggcggggagtggtcgccggtgca 33174459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 38899148 - 38899112
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcg 207  Q
    |||||||| |||| |||||||||||||||||||||||    
T  38899148 tgtaacactcaagactgacgagggcggggagtggtcg 38899112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 1130 - 1182
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1130 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 1182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 10844793 - 10844845
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10844793 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 10844845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 22549231 - 22549179
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22549231 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 22549179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 8080579 - 8080526
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  8080579 ttgtaacacccaaggctgacgagggcgaggagtggtcgccggtgcacaaggcac 8080526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 28453249 - 28453301
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  28453249 tgtaacacccaaggctgacgagggcggggagtggttgccggtgcacaaggcac 28453301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 32292307 - 32292359
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  32292307 tgtaacacccaaggctgacgagggcggggagtgatcgccggtgcacaaggcac 32292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 22026289 - 22026340
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  22026289 tgtaacacccaaggctgacgagggcgaggagtggtcgccggtgcacaaggca 22026340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 27022576 - 27022522
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  27022576 attgtaatacccaaggctgacgaggacggggagtggtcgccggtgcacaaggcac 27022522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 12827491 - 12827438
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  12827491 ttgtaacacccaaggctgacgagggtggggagtgatcgccggtgcacaaggcac 12827438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 41659341 - 41659292
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  41659341 ttgtaacacctaaggctgacgagggcggggagtggtcgccggtgcacaag 41659292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 27925809 - 27925861
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  27925809 tgtaacacccaaggctgacgaggacggggagtggtcgctggtgcacaaggcac 27925861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 22548785 - 22548732
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcact 224  Q
    |||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||    
T  22548785 tgtaacacccaaggctgatgagggtggggagtggtcgccagtgcacaaggcact 22548732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 6465146 - 6465094
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| || | |||||||||||| ||||||||||||||||||||||||||    
T  6465146 tgtaacacccacgtctgacgagggcgaggagtggtcgccggtgcacaaggcac 6465094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 22840765 - 22840721
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgca 215  Q
    |||||||| |||||||||| |||||||||||||||||||||||||    
T  22840765 tgtaacacccaaggctgacaagggcggggagtggtcgccggtgca 22840721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 33852493 - 33852442
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  33852493 tgtaacacccaaggctgacgagggcgtg-agtggtcgccggtgcacaaggcac 33852442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 27022110 - 27022067
Alignment:
Q  180 caaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  27022110 caaggctgacgagggtggggagtggtcgcgggtgcacaaggcac 27022067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 1645979 - 1645927
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1645979 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 1645927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 12692229 - 12692177
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12692229 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 12692177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 50398768 - 50398717
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50398768 tgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggca 50398717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 4127668 - 4127616
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4127668 tgtaacacccaagactgacgagggcggggagtggtcgccggtgcacaaggcac 4127616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 4128120 - 4128068
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  4128120 tgtaacacccaaggctgacgagggcgaggagtggtcgccggtgcacaaggcac 4128068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 23943016 - 23942964
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  23943016 tgtaacacctaaggatgacgagggcggggagtggtcgccggtgcacaaggcac 23942964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 29628899 - 29628845
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||  |||||| ||||||| |||||||||||||||||||||||||||||    
T  29628899 attgtaacatccaaggcggacgaggacggggagtggtcgccggtgcacaaggcac 29628845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 10165873 - 10165924
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||||||||||    
T  10165873 tgtaacactcaaggctgacgagggtggggagtggtcgcggatgcacaaggca 10165924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 51331509 - 51331460
Alignment:
Q  173 taacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||| ||||||||| |||||||||||||||| | ||||||||||||||    
T  51331509 taacacccaaggctgatgagggcggggagtggttgtcggtgcacaaggca 51331460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 3169116 - 3169164
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||| ||||| |||||||| |||||||||||| ||||||||||||    
T  3169116 tgtaacacccaaggttgacgaggacggggagtggtcaccggtgcacaag 3169164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 8468014 - 8467978
Alignment:
Q  186 tgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8468014 tgacgagggcggggagtggtcgccagtgcacaaggca 8467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 9424072 - 9424036
Alignment:
Q  187 gacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9424072 gacgagggcggggagtggtcgtcggtgcacaaggcac 9424036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 27029188 - 27029235
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaa 218  Q
    |||||||| | ||||||||||||||||||||||||||||  |||||||    
T  27029188 tgtaacacccgaggctgacgagggcggggagtggtcgccaatgcacaa 27029235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 21067666 - 21067699
Alignment:
Q  190 gagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||||||||||||||||||| |||||||    
T  21067666 gagggcggggagtggtcgccggtgcagaaggcac 21067699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 24629662 - 24629611
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||| ||||||  ||||||||||||||||| ||||||||||    
T  24629662 tgtaacacccaaggctaacgaggt-ggggagtggtcgccggttcacaaggcac 24629611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 27026425 - 27026465
Alignment:
Q  182 aggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||||||  ||||||||||||| ||||||||||||||    
T  27026425 aggctgacgagaacggggagtggtcgtcggtgcacaaggca 27026465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 31817617 - 31817577
Alignment:
Q  182 aggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  31817617 aggctgacgaggccggggagtggtcaccagtgcacaaggca 31817577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 2651 - 2704
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  2651 ttgtaacacccaaggctgacgagggcggggagtggtcgccggagcacaaggcac 2704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 23583 - 23635
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  23583 tgtaacacccaaggctgacgagggcggggaatggtcgccggtgcacaaggcac 23635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 2681452 - 2681400
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  2681452 tgtaacacccaaggctgacgagggcggggagtggtcgccggtacacaaggcac 2681400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 3652889 - 3652941
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  3652889 tgtaacacccaagactgacgagggcggggagtggtcgccggtgcacaaggcac 3652941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 20850231 - 20850283
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  20850231 tgtaacacccaaggctgacgagggcgaggagtggtcgccggtgcacaaggcac 20850283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 6331148 - 6331097
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  6331148 tgtaacacccaaggctgacgagggtggggagtggtcgccggtgcacaaggca 6331097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 20126418 - 20126367
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20126418 tgtaacacccaaggccgacgagggcggggagtggtcgccggtgcacaaggca 20126367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 2720801 - 2720752
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2720801 ttgtaacacctaaggctgacgagggcggggagtggtcgccggtgcacaag 2720752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 21311881 - 21311933
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  21311881 tgtaacacccaaggctgacgagggcgggaagtggtcgccagtgcacaaggcac 21311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 3652398 - 3652448
Alignment:
Q  173 taacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  3652398 taacacccaaggctgatgagggcggggagtggtcgtcggtgcacaaggcac 3652448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 23986543 - 23986502
Alignment:
Q  181 aaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  23986543 aaggctgacgagggcggggagtggtcgtcggtgcacaaggca 23986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 20896924 - 20896873
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||| |||||||||||||| ||| |||||||||||| |||||||||||    
T  20896924 tgtaacacccaaggctgacgaggacggagagtggtcgccgttgcacaaggca 20896873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 14771957 - 14771903
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||| || ||||||||||||| ||||||| |||||||||| ||||||||    
T  14771957 attgtaacacccacggctgacgagggcagggagtgatcgccggtgcgcaaggcac 14771903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 17850826 - 17850880
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||| || ||||||| || |||||||| ||||||||||||||||||||||||    
T  17850826 attgtaatactcaaggctaacaagggcgggaagtggtcgccggtgcacaaggcac 17850880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 2891073 - 2891025
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaag 219  Q
    |||||||| |||||||||||||||| |||| |||| |||||||||||||    
T  2891073 tgtaacacccaaggctgacgagggcagggactggttgccggtgcacaag 2891025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 11062196 - 11062248
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||| | ||||||| |||| |||||||||||||| ||||||||||||||||    
T  11062196 tgtaacgcccaaggcttacgaaggcggggagtggtcaccggtgcacaaggcac 11062248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 17851286 - 17851336
Alignment:
Q  173 taacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||| |||||||  |||||||||| |||| |||||||||||||||||||    
T  17851286 taacacccaaggctaccgagggcgggaagtgttcgccggtgcacaaggcac 17851336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 4469 - 4523
Alignment:
Q  169 attgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||    
T  4469 attgtaacacccaaggctgacgagggcgaggagtggccgccggtgcacaaggcac 4523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 4926 - 4978
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||||||||||    
T  4926 tgtaacacctaaggctgacgagggcgaggagtggtcgccggtgcacaaggcac 4978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 151550 - 151602
Alignment:
Q  170 ttgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  151550 ttgtaacacccaatgctgacgagggcggggagt-gtcgccggtgcacaaggcac 151602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 154668 - 154719
Alignment:
Q  171 tgtaacacacaaggctgacgagggcggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  154668 tgtaacacccaaggctgatgagggcggggagt-gtcgccggtgcacaaggcac 154719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 4207 - 4172
Alignment:
Q  173 taacacacaaggctgacgagggcggggagtggtcgc 208  Q
    |||||| |||||||||||||||||||||||||||||    
T  4207 taacacccaaggctgacgagggcggggagtggtcgc 4172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 17916 - 17863
Alignment:
Q  171 tgtaacacacaaggctgacgagggc-ggggagtggtcgccggtgcacaaggcac 223  Q
    |||||||| || ||||||||||||  ||||||||||||||||||||| ||||||    
T  17916 tgtaacacccacggctgacgagggaaggggagtggtcgccggtgcacgaggcac 17863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 14663 - 14703
Alignment:
Q  182 aggctgacgagggcggggagtggtcgccggtgcacaaggca 222  Q
    |||||||||||| ||| ||||||||||||||||| ||||||    
T  14663 aggctgacgaggacggagagtggtcgccggtgcaaaaggca 14703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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