View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_5 (Length: 430)
Name: NF10722_low_5
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 6490568 - 6490153
Alignment:
| Q |
1 |
gcctcagacattccatatagttgtgcaaattccatcttatggttcacctttccaatccctaattcatgtgcttttgcagcagccaattttcctatacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490568 |
gcctcagacattccatatagttgtgcaaattccatcttatggttcacctttccaatccctaattcatgtgcttttgcagcagccaattttcctatacaaa |
6490469 |
T |
|
| Q |
101 |
aaacaacattaattaaattaaa-tcaaactcatacccctcaattgcatatatcaatttccttatcatcataatatcatataatatatacctgattcaatg |
199 |
Q |
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|||||||||||||||||| ||| ||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490468 |
aaacaacattaattaaatcaaactcatac-catacccctcaattgcatacattaatttccttatcatcataatatcatataatatatacctgattcaatg |
6490370 |
T |
|
| Q |
200 |
ttatgagttgcaagaacaactccaccaggaccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490369 |
ttatgagttgcaagaacaactccaccaggaccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgt |
6490270 |
T |
|
| Q |
300 |
tatgaattggtgaagcatatcccaaatcagcagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccatttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490269 |
tatgaattggtgaagcatatcccaaatcagcagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccatttt |
6490170 |
T |
|
| Q |
400 |
ctcagcagcctttgatg |
416 |
Q |
| |
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||||||||||||||||| |
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| T |
6490169 |
ctcagcagcctttgatg |
6490153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 413
Target Start/End: Original strand, 6348351 - 6348534
Alignment:
| Q |
230 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
329 |
Q |
| |
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|||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||| |||||||| | |||||||||||| | | || ||| |
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| T |
6348351 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatctttaatagtatcatgaattggtgacttagacccaaaagatt |
6348450 |
T |
|
| Q |
330 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttg |
413 |
Q |
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| T |
6348451 |
cagccaatgtactttctgttgacatataagcacctctaaccaatttaaatcccataggaattccaattttttcagcagcttttg |
6348534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 6347694 - 6347786
Alignment:
| Q |
7 |
gacattccatatagttgtgcaaattccatcttatggttcacctttccaatccctaattcatgtgcttttgcagcagccaattttcctatacaa |
99 |
Q |
| |
|
||||||||| |||||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||||||| || |||||||| |||| |||| |
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| T |
6347694 |
gacattccacatagttgtgcaaattcaagcttatggttcacttttccaatcccaatttcatatgcttttgctgctgccaatttccctacacaa |
6347786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 413
Target Start/End: Original strand, 6326115 - 6326298
Alignment:
| Q |
230 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
329 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||| | |||||| | |||||||||||| | | || ||| |
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|
| T |
6326115 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagatt |
6326214 |
T |
|
| Q |
330 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttg |
413 |
Q |
| |
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|||||||| | ||||| | ||||||||||||||||||||||| ||||||||||| || || || |||| |||||||| |||| |
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| T |
6326215 |
cagccaatgtactttctgtggacatataagcacctctaaccaatttaaatcccataggaattccaatttcttcagcagcttttg |
6326298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 413
Target Start/End: Original strand, 6333071 - 6333254
Alignment:
| Q |
230 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
329 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||| | |||||| | |||||||||||| | | || ||| |
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| T |
6333071 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagatt |
6333170 |
T |
|
| Q |
330 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttg |
413 |
Q |
| |
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|||||||| | ||||| | ||||||||||||||||||||||| ||||||||||| || || || |||| |||||||| |||| |
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| T |
6333171 |
cagccaatgtactttctgtggacatataagcacctctaaccaatttaaatcccataggaattccaatttcttcagcagcttttg |
6333254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 6325476 - 6325563
Alignment:
| Q |
7 |
gacattccatatagttgtgcaaattccatcttatggttcacctttccaatccctaattcatgtgcttttgcagcagccaattttccta |
94 |
Q |
| |
|
||||||||| |||||||||||||||| | ||| || ||||||||||| ||||| | ||||| ||||||||| ||||||||||| |||| |
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| T |
6325476 |
gacattccacatagttgtgcaaattcaagcttgtgattcacctttcccatcccaatttcatatgcttttgctgcagccaatttcccta |
6325563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 6332432 - 6332519
Alignment:
| Q |
7 |
gacattccatatagttgtgcaaattccatcttatggttcacctttccaatccctaattcatgtgcttttgcagcagccaattttccta |
94 |
Q |
| |
|
||||||||| |||||||||||||||| | ||| || ||||||||||| ||||| | ||||| ||||||||| ||||||||||| |||| |
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| T |
6332432 |
gacattccacatagttgtgcaaattcaagcttgtgattcacctttcccatcccaatttcatatgcttttgctgcagccaatttcccta |
6332519 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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