View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_50 (Length: 233)
Name: NF10722_low_50
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 11111850 - 11111649
Alignment:
| Q |
17 |
agaaagagcttgtgacagaaagaaaggattttataatgaaacttacattgaaagaaggttatcttacacacataaagcacgaaaaatacagtatagctca |
116 |
Q |
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| T |
11111850 |
agaaagagcttgtgacagaaagaaaggattttataatgaaaattacattgaaagaaggttatcttacacacataaaacacgtaaaatacagtatacctca |
11111751 |
T |
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| Q |
117 |
tgacacaaatgtgct-----agcacttctctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaa |
211 |
Q |
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| T |
11111750 |
tgacacaaatgtgcttagccagcacttctctttattagtgaattccaatcacca----catttcatctaaagtaacccacattcatttagattgaactaa |
11111655 |
T |
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| Q |
212 |
ccatat |
217 |
Q |
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|||||| |
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| T |
11111654 |
ccatat |
11111649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 11119505 - 11119417
Alignment:
| Q |
129 |
gctagcacttctctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaaccatat |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119505 |
gctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaaccatat |
11119417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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