View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_58 (Length: 217)
Name: NF10722_low_58
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 5696460 - 5696512
Alignment:
| Q |
14 |
aagaatcaagactttacaaagattcttgttgcaagaagaggtggagaaataat |
66 |
Q |
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| T |
5696460 |
aagagtcaagactttacaaagattcttgttgcaagaagaggcggagaaataat |
5696512 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 5670783 - 5670833
Alignment:
| Q |
25 |
ctttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat |
75 |
Q |
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| T |
5670783 |
ctttacaatgattattgttgcaagaagaggaggagaaataataaagtagat |
5670833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 5680276 - 5680326
Alignment:
| Q |
25 |
ctttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat |
75 |
Q |
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| T |
5680276 |
ctttacaatgattattgttgcaagaagaggaggagaaataataaagtagat |
5680326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 5795767 - 5795813
Alignment:
| Q |
154 |
cttataagaaaacatacaatagtataacctttggtgactaatataag |
200 |
Q |
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| T |
5795767 |
cttataagcaaacatacaataatataacctttggtgactaatataag |
5795813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 5694428 - 5694478
Alignment:
| Q |
25 |
ctttacaaagattcttgttgcaagaagaggtggagaaataataaagtagat |
75 |
Q |
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| T |
5694428 |
ctttacaatgattattgttgcaagaagaggaggagaaataatcaagtagat |
5694478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 5736864 - 5736905
Alignment:
| Q |
34 |
gattcttgttgcaagaagaggtggagaaataataaagtagat |
75 |
Q |
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| T |
5736864 |
gattcttgttgcaagaaaaggaggagaaataataaagtagat |
5736905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 5773976 - 5774017
Alignment:
| Q |
34 |
gattcttgttgcaagaagaggtggagaaataataaagtagat |
75 |
Q |
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| T |
5773976 |
gattcttgttgcaagaaaaggaggagaaataataaagtagat |
5774017 |
T |
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