View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_6 (Length: 405)

Name: NF10722_low_6
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_6
NF10722_low_6
[»] chr7 (2 HSPs)
chr7 (43-255)||(78718-78930)
chr7 (321-389)||(78585-78652)
[»] chr8 (1 HSPs)
chr8 (160-237)||(24468119-24468196)
[»] chr6 (1 HSPs)
chr6 (156-236)||(164023-164102)
[»] chr4 (1 HSPs)
chr4 (156-236)||(18208307-18208386)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 78930 - 78718
Alignment:
Q  43 taagctcaaaaagatcatccctaaaggacacacagctatcataatcaactcaataatgaaaagaatacacgaattatgcaagttgaggccacgtcgtata 142  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  78930 taagctcaaaaagatcatccctaaaggacacactgctatcataatcaacgcaataatgaaaagaatacacgaattatgcaaggtgaggtcacgtcctata 78831  T
Q  143 attagctcacatgttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggattcggttt 242  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||| || || ||||    
T  78830 attagctcacatgttcaacatcaaactctatgagatatgtcctatatttcacccgcaacttattgacaatcttctccaactctgatacaagaatctgttt 78731  T
Q  243 caagggcactggc 255  Q
    |||||||||||||    
T  78730 caagggcactggc 78718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 78652 - 78585
Alignment:
Q  321 cacatcaattggtggttagtttctcaccagttaaacaatggcaagatagcaaatcttggacgttgtaat 389  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  78652 cacatcaattggtagt-agtttctcaccagttaaacaatggtaagatagcagatcttggacgttataat 78585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 24468119 - 24468196
Alignment:
Q  160 acatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggattc 237  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||    
T  24468119 acattaaactctatgtgatatgtcctatatttcacccgcaactcattgacaatcttgtccaactcagatacaggattc 24468196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 164023 - 164102
Alignment:
Q  156 ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt 236  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||  |||| |||||| ||||||||||||||| ||||    
T  164023 ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt 164102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 18208386 - 18208307
Alignment:
Q  156 ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt 236  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||  |||| |||||| ||||||||||||||| ||||    
T  18208386 ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt 18208307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University