View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_60 (Length: 206)

Name: NF10722_low_60
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_60
NF10722_low_60
[»] chr3 (12 HSPs)
chr3 (12-191)||(29690930-29691109)
chr3 (12-108)||(30238215-30238310)
chr3 (12-97)||(9031707-9031792)
chr3 (106-184)||(9030645-9030723)
chr3 (11-81)||(2118176-2118246)
chr3 (58-108)||(49458770-49458820)
chr3 (63-108)||(21386134-21386179)
chr3 (42-105)||(53836318-53836380)
chr3 (63-105)||(4962359-4962401)
chr3 (58-108)||(33693670-33693720)
chr3 (64-108)||(7437194-7437238)
chr3 (112-184)||(30238127-30238199)
[»] chr8 (12 HSPs)
chr8 (12-108)||(33177515-33177611)
chr8 (12-184)||(4870705-4870888)
chr8 (130-184)||(33177425-33177479)
chr8 (27-105)||(19484558-19484635)
chr8 (58-108)||(27915201-27915251)
chr8 (58-108)||(27961620-27961670)
chr8 (58-108)||(42423609-42423659)
chr8 (63-108)||(44977140-44977185)
chr8 (58-106)||(27878259-27878307)
chr8 (58-106)||(28018440-28018488)
chr8 (62-108)||(8029498-8029544)
chr8 (58-108)||(12522051-12522101)
[»] chr4 (11 HSPs)
chr4 (12-191)||(40317211-40317414)
chr4 (12-191)||(40327285-40327488)
chr4 (12-108)||(25842629-25842725)
chr4 (47-107)||(26955671-26955731)
chr4 (58-108)||(32890280-32890330)
chr4 (64-108)||(46862591-46862635)
chr4 (42-105)||(29469523-29469585)
chr4 (58-136)||(35518124-35518205)
chr4 (58-108)||(24966138-24966188)
chr4 (58-108)||(29509708-29509758)
chr4 (58-108)||(50517519-50517569)
[»] chr1 (15 HSPs)
chr1 (11-184)||(226268-226458)
chr1 (60-184)||(46042295-46042431)
chr1 (26-184)||(42637701-42637872)
chr1 (26-105)||(5208933-5209011)
chr1 (26-105)||(1242960-1243038)
chr1 (27-105)||(41353786-41353863)
chr1 (58-106)||(48966153-48966201)
chr1 (64-108)||(49452705-49452749)
chr1 (26-105)||(8147706-8147784)
chr1 (42-105)||(11578779-11578841)
chr1 (65-108)||(32759747-32759790)
chr1 (58-108)||(28403626-28403676)
chr1 (58-108)||(49236643-49236693)
chr1 (63-108)||(3593646-3593691)
chr1 (50-98)||(2292900-2292948)
[»] chr2 (13 HSPs)
chr2 (12-184)||(37810449-37810635)
chr2 (23-108)||(24026164-24026249)
chr2 (45-108)||(32294246-32294309)
chr2 (47-108)||(30850777-30850838)
chr2 (26-106)||(2308394-2308474)
chr2 (12-96)||(28546137-28546220)
chr2 (26-105)||(18899582-18899660)
chr2 (58-108)||(31846813-31846863)
chr2 (32-88)||(32241928-32241984)
chr2 (58-108)||(9731349-9731399)
chr2 (58-108)||(34342648-34342698)
chr2 (64-106)||(38295371-38295413)
chr2 (63-108)||(18727288-18727333)
[»] chr7 (7 HSPs)
chr7 (25-108)||(1254165-1254248)
chr7 (28-184)||(6268821-6268989)
chr7 (58-108)||(23017388-23017438)
chr7 (26-105)||(14741795-14741873)
chr7 (27-105)||(4639553-4639630)
chr7 (58-108)||(43172470-43172520)
chr7 (58-108)||(21486540-21486591)
[»] chr6 (8 HSPs)
chr6 (21-176)||(21010481-21010647)
chr6 (47-184)||(15381145-15381286)
chr6 (58-108)||(16439105-16439155)
chr6 (58-108)||(33640919-33640969)
chr6 (12-69)||(12029257-12029314)
chr6 (63-108)||(28900477-28900522)
chr6 (58-108)||(2607312-2607362)
chr6 (63-108)||(24194881-24194926)
[»] chr5 (7 HSPs)
chr5 (48-184)||(36195939-36196084)
chr5 (72-184)||(31913806-31913930)
chr5 (47-108)||(15286140-15286201)
chr5 (106-184)||(16497471-16497548)
chr5 (26-105)||(28622847-28622925)
chr5 (58-107)||(29716548-29716597)
chr5 (26-105)||(5650452-5650530)
[»] scaffold0118 (1 HSPs)
scaffold0118 (48-108)||(38227-38287)
[»] scaffold0573 (1 HSPs)
scaffold0573 (63-108)||(9272-9317)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 7e-88; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 29690930 - 29691109
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaacttt 111  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29690930 gagaagaaaacaccgatgataatgatattgtggaactttagaaggattgaacttttgaaaaaattaacttgtttattttttggataggtttattaacttt 29691029  T
Q  112 tgaaacttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgattataagt 191  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29691030 tgaaatttggtttttcggatggtttaaagtcttatgaaacttctgattttgcaaattaattttgtattttgattataagt 29691109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 30238310 - 30238215
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||| ||||| ||| ||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30238310 gagatgaagacaccaatgttaatgatgttatgaaactttagaaggattgaacttttgaaaaa-ttaactagtttattttttggataggtttattaac 30238215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 9031792 - 9031707
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggata 97  Q
    |||| ||| ||||| ||||||||||||||  | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9031792 gagatgaagacaccaatgataatgatattaagaaactttagaatgattgaacttttgaagaaattaactagtttattttttggata 9031707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 9030723 - 9030645
Alignment:
Q  106 aacttttgaaacttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    ||||||| ||||||| ||| | ||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||||    
T  9030723 aacttttaaaacttgctttattggatggtttaaagtcttaccaaacttatgattttgcaagttaattttgtattttgat 9030645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 2118246 - 2118176
Alignment:
Q  11 agagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaacta 81  Q
    ||||| ||||| ||||||||||||||| || |  || ||||||| ||| ||||||||||||||||||||||    
T  2118246 agagatgaaaataccgatgataatgatgttataaaaatttagaaagatcgaacttttgaaaaaattaacta 2118176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 49458770 - 49458820
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  49458770 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 49458820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 21386179 - 21386134
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| |||||||||||||||||||||||| || |||||||||    
T  21386179 cttttgaagaaattaactagtttattttttggacagttttattaac 21386134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 53836318 - 53836380
Alignment:
Q  42 tggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  53836318 tggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 53836380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 4962401 - 4962359
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||    
T  4962401 cttttgaagaaattaactagtttattttttagatagttttatt 4962359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 33693670 - 33693720
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||| ||||||||||||| ||||| |||||||||    
T  33693670 ttgaccttttgaagaaattaagtagtttattttttagatagttttattaac 33693720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 7437238 - 7437194
Alignment:
Q  64 ttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||  |||||||||||||||||||| ||||| |||||||||    
T  7437238 ttttgaagtaattaactagtttattttttagatagttttattaac 7437194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 30238199 - 30238127
Alignment:
Q  112 tgaaacttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    |||||||||  |||| |||||||||| ||||| |||||| |  | ||||| ||| ||||||||||||||||||    
T  30238199 tgaaacttgtatttttggatggtttagagtctaatgaaaatcatgatttttcaatttaattttgtattttgat 30238127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 33177611 - 33177515
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33177611 gagatgaagacaccaatgataatgatgttatgaaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 33177515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 4870888 - 4870705
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttatt-ttttggataggtttatt---aa 107  Q
    |||| ||| ||||| ||||||||||| || || || |||||| ||||||||||||||||  |||||||||||||||| |||||||||| ||||||   ||    
T  4870888 gagatgaagacaccaatgataatgatgttatgaaattttagacggattgaacttttgaagtaattaactagtttatttttttggatagttttattaacaa 4870789  T
Q  108 cttt-----tgaaacttggtttttcggatggttt--aaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    ||||     ||||||||| || || | |||||||  ||  ||||||||||||| | ||||||||| |||||||| |||||||||    
T  4870788 ctttatatgtgaaacttgtttctttgaatggtttacaatctcttatgaaacttatgattttgcaagttaattttctattttgat 4870705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 33177479 - 33177425
Alignment:
Q  130 atggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    |||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||    
T  33177479 atggtttagagtcttatgaaacttatgattttgcaagttaattttgtattttgat 33177425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 19484558 - 19484635
Alignment:
Q  27 atgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  19484558 atgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 19484635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 27915251 - 27915201
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  27915251 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 27915201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 27961670 - 27961620
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  27961670 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 27961620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 42423609 - 42423659
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  42423609 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 42423659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 44977140 - 44977185
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  44977140 cttttgaagaaattaactagtttattttttagatagttttattaac 44977185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 27878307 - 27878259
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttatta 106  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||    
T  27878307 ttgaccttttgaagaaattaactagtttattttttagatagttttatta 27878259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 28018488 - 28018440
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttatta 106  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||    
T  28018488 ttgaccttttgaagaaattaactagtttattttttagatagttttatta 28018440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 8029544 - 8029498
Alignment:
Q  62 acttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||| || ||||||||||||||||||||| ||||| |||||||||    
T  8029544 actttttaagaaattaactagtttattttttagatagttttattaac 8029498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 12522101 - 12522051
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||| ||||    
T  12522101 ttgaccttttgaagaaattaactagtttatttttttgatagttttaataac 12522051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 40317414 - 40317211
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt------ 105  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||| ||||||          
T  40317414 gagaagaaaacaccgatgataatgatgttgtggaactttagaaggattgatcttttgaagaaattaactagttcattttttgaatagatttattaataac 40317315  T
Q  106 ------aacttttgaaacttggtttttc------------ggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgattat 187  Q
          ||||| ||||||||||||||||            |||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||| |    
T  40317314 tttagaaacttctgaaacttggtttttcggatggttctttggatggtttaaagtctaatgaaacttatgattttgcaagttaattttgtattttgattct 40317215  T
Q  188 aagt 191  Q
    ||||    
T  40317214 aagt 40317211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 40327488 - 40327285
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt------ 105  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||| ||||||          
T  40327488 gagaagaaaacaccgatgataatgatgttgtggaactttagaaggattgatcttttgaagaaattaactagttcattttttgaatagatttattaataac 40327389  T
Q  106 ------aacttttgaaacttggtttttc------------ggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgattat 187  Q
          ||||| ||||||||||||||||            |||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||| |    
T  40327388 tttagaaacttctgaaacttggtttttcggatggttctttggatggtttaaagtctaatgaaacttatgattttgcaagttaattttgtattttgattct 40327289  T
Q  188 aagt 191  Q
    ||||    
T  40327288 aagt 40327285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 25842725 - 25842629
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||| ||| ||||||||||||| || |||||||||| ||  ||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  25842725 gagatgaagacatcgatgataatgatgttatggaactttaaaaacattgatcttttgaagaaattaactagtttattttttggatagctttattaac 25842629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 26955671 - 26955731
Alignment:
Q  47 ctttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaa 107  Q
    ||||| || ||||||||||||||| ||||||| | ||||||||||||||||| ||||||||    
T  26955671 ctttaaaaagattgaacttttgaagaaattaaattgtttattttttggatagttttattaa 26955731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 32890280 - 32890330
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  32890280 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 32890330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 46862635 - 46862591
Alignment:
Q  64 ttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  46862635 ttttgaagaaattaactagtttattttttagatagttttattaac 46862591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 29469523 - 29469585
Alignment:
Q  42 tggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  29469523 tggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 29469585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 35518205 - 35518124
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttatt---aacttttgaaacttggtttttcggatggttt 136  Q
    |||| |||||||| |||||||||||||||||| ||| |||| ||||||   |||||| |||| ||| ||||| |||||||||    
T  35518205 ttgaccttttgaagaaattaactagtttatttattgaatagttttattaacaactttagaaatttgtttttttggatggttt 35518124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 24966188 - 24966138
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| |||||||||||||| |||||| ||||| |||||||||    
T  24966188 ttgaccttttgaagaaattaactagtttgttttttagatagttttattaac 24966138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 29509758 - 29509708
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||| ||||||||||| ||||| |||||||||    
T  29509758 ttgaccttttgaagaaattaactggtttattttttagatagttttattaac 29509708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 50517519 - 50517569
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||| | |||||||||    
T  50517519 ttgaccttttgaagaaattaactagtttattttttagatggatttattaac 50517569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 226268 - 226458
Alignment:
Q  11 agagaagaaaacaccgatgataatgatattctggaactttag-aaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt---- 105  Q
    ||||| ||| ||||||||||||||||| || || |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||        
T  226268 agagatgaagacaccgatgataatgatgttatgaaactttaggaaagattgaacttttgaaaaaattaactagtttattttttagataggtttattaaca 226367  T
Q  106 --------aacttttgaaacttggttt----ttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
            ||||| ||||||||| |||    || |||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||    
T  226368 actttagaaacttatgaaacttgctttttaatttggatggtttagagtcttatgaaacttatgattttgcaagttaattttgtattttgat 226458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 46042295 - 46042431
Alignment:
Q  60 gaacttttgaaaaaattaactagtttattttttggataggtttattaac------------ttttgaaacttggtttttcggatggtttaaagtcttatg 147  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||            || ||||||||  ||||| |||||||||| | |||||||    
T  46042295 gaacttttgacgaaattaactagtttattttttggataggtttattaacaactttagaaaattgtgaaacttacttttttggatggtttagaatcttatg 46042394  T
Q  148 aaacttctaattttgcaaattaattttgtattttgat 184  Q
    |||||| | ||||||||| ||| ||||||||||||||    
T  46042395 aaacttatgattttgcaagttatttttgtattttgat 46042431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 42637872 - 42637701
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtt--tattttttggatagg-----------tttattaactttt 112  Q
    |||||||||||| || |||||||| | |||||||| ||||||||| |||||| ||||||  | ||||||||||| |           ||||  ||||| |    
T  42637872 gatgataatgatgttatggaacttcaaaaggattggacttttgaagaaattagctagtttcttttttttggatatgttattaacaactttagaaacttgt 42637773  T
Q  113 gaaacttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    | |||||| ||||| |||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||    
T  42637772 gcaacttgcttttttggatggtttagagtcttatgaaacttatgattttgcaagttaattttgtattttgat 42637701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 5209011 - 5208933
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || |||||||||||||| ||||| |||||||| |||||| ||||||| |||||||||||| ||||||    
T  5209011 gatgagaatgatgttatggaactttagaag-attgaccttttgaagaaattacctagtttgttttttggatagttttatt 5208933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 1243038 - 1242960
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  1243038 gatgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 1242960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 41353786 - 41353863
Alignment:
Q  27 atgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  41353786 atgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 41353863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 48966201 - 48966153
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttatta 106  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||    
T  48966201 ttgaccttttgaagaaattaactagtttattttttagatagttttatta 48966153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 49452749 - 49452705
Alignment:
Q  64 ttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  49452749 ttttgaagaaattaactagtttattttttagatagttttattaac 49452705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 8147706 - 8147784
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || |||||||||||||| ||||| |||| ||| |||||| |||||||  ||||||||||| ||||||    
T  8147706 gatgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttggtttttggatagttttatt 8147784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 11578841 - 11578779
Alignment:
Q  42 tggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  11578841 tggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 11578779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 32759790 - 32759747
Alignment:
Q  65 tttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||    
T  32759790 tttgaagaaattaactagtttattttttagatagttttattaac 32759747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 28403676 - 28403626
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| |||||||||||||||||||||  |||| |||||||||    
T  28403676 ttgaccttttgaagaaattaactagtttattttttaaatagttttattaac 28403626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 49236693 - 49236643
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||||| || ||||||||||||||||||||| ||||| |||||||||    
T  49236693 ttgaccttttaaagaaattaactagtttattttttagatagttttattaac 49236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 3593646 - 3593691
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| |||||||| |||||||||||| ||||| |||||||||    
T  3593646 cttttgaagaaattaacaagtttattttttagatagttttattaac 3593691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2292948 - 2292900
Alignment:
Q  50 tagaaggattgaacttttgaaaaaattaactagtttattttttggatag 98  Q
    |||||||||| |||||||||| ||||||| | |||||||||||| ||||    
T  2292948 tagaaggattaaacttttgaagaaattaatttgtttattttttgtatag 2292900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 37810635 - 37810449
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaacttta--gaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt---a 106  Q
    |||| ||| |||| |||||||||||| ||||| ||| |||  ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||   |    
T  37810635 gagatgaagacactgatgataatgatgttctgaaaccttatagaaagattgaacttttgaagaaattaactagtttattttttggataggtttattaaca 37810536  T
Q  107 acttt---------tgaaacttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    |||||         ||||||||  | |||||||||||||| ||||||||||||||| | |||||| || ||||||||||||||||||    
T  37810535 actttatcaacatgtgaaacttactctttcggatggtttagagtcttatgaaacttatgattttgtaagttaattttgtattttgat 37810449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 24026164 - 24026249
Alignment:
Q  23 accgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    ||||||||||||||| || || || |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  24026164 accgatgataatgatgttatgaaattttagaaggactgaacttttgaagaaattaactagtttattttttggatagttttattaac 24026249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 32294246 - 32294309
Alignment:
Q  45 aactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  32294246 aactttaaaaggattgatcttttgaagaaattaactagtttattttttggatagttttattaac 32294309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 30850777 - 30850838
Alignment:
Q  47 ctttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||||||||    
T  30850777 ctttagaaggattgaacttttgaataaattaacttggttattttatggatagttttattaac 30850838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 2308474 - 2308394
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatta 106  Q
    ||||| |||||| || |||||||||||||| ||||| |||||||| ||||||  ||||||||||||||||||  |||||||    
T  2308474 gatgaaaatgatgttatggaactttagaagcattgaccttttgaagaaattatttagtttattttttggataattttatta 2308394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 28546137 - 28546220
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggat 96  Q
    |||| ||| ||||||||||||| ||| || ||||| | ||||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  28546137 gagatgaagacaccgatgataaggatgttatggaaatctagaaagattgaatttttgaagaaattaactagttt-ttttttggat 28546220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 18899660 - 18899582
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  18899660 gatgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 18899582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31846863 - 31846813
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  31846863 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 31846813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 32241984 - 32241928
Alignment:
Q  32 aatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttatt 88  Q
    |||||| || ||||| |||| ||||||||| |||||||| |||||||||||||||||    
T  32241984 aatgatgttatggaattttaaaaggattgatcttttgaagaaattaactagtttatt 32241928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 9731349 - 9731399
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||| ||||||||||||| ||||| |||||||||    
T  9731349 ttgaccttttgaagaaattaattagtttattttttagatagttttattaac 9731399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 34342648 - 34342698
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||||| || ||||||||||||||||||||| ||||| |||||||||    
T  34342648 ttgaccttttcaagaaattaactagtttattttttagatagttttattaac 34342698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 38295413 - 38295371
Alignment:
Q  64 ttttgaaaaaattaactagtttattttttggataggtttatta 106  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  38295413 ttttgaagaaattaactagtttattttttagatagttttatta 38295371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 18727333 - 18727288
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| ||||||||||||| |||||||| |||| |||||||||    
T  18727333 cttttgaagaaattaactagttgattttttgaatagttttattaac 18727288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 1254248 - 1254165
Alignment:
Q  25 cgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    ||||||||||||| || || |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  1254248 cgatgataatgatgttatgaaactttagaaggattgaacttttgaagaaactaactaatttattttttggataggtttattaac 1254165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 6268821 - 6268989
Alignment:
Q  28 tgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt------------aacttttgaa 115  Q
    |||||||||| || || ||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||            ||||| ||||    
T  6268821 tgataatgatgttatgaaactttaaaaggattgaacttttgaaaaaattaactagtttgtttcttgaataggtttattaacaactttagaaacttgtgaa 6268920  T
Q  116 acttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    ||||| ||||| | |||||||| |||||| | ||| || | ||||||||| ||||||||||||||||||    
T  6268921 acttgtttttttgaatggtttagagtcttgtaaaagttatgattttgcaagttaattttgtattttgat 6268989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 23017388 - 23017438
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||    
T  23017388 ttgaccttttgaaaaaattaactagtttattttttagatagttttattaac 23017438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 14741795 - 14741873
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  14741795 gatgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 14741873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 4639630 - 4639553
Alignment:
Q  27 atgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    |||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  4639630 atgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 4639553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 43172470 - 43172520
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  43172470 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 43172520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 21486540 - 21486591
Alignment:
Q  58 ttgaacttttgaaaaaattaactagttta-ttttttggataggtttattaac 108  Q
    |||| |||||||||||||||||||||||| |||||| ||||| |||||||||    
T  21486540 ttgaccttttgaaaaaattaactagtttatttttttagatagttttattaac 21486591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 21010647 - 21010481
Alignment:
Q  21 acaccgatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt---aacttttgaaac 117  Q
    ||||||||||||||||| || || ||||||| |||||||||||||||||| ||||||||||||||||  ||| |||||||| |||   |||||| |||||    
T  21010647 acaccgatgataatgatgttatgaaactttataaggattgaacttttgaagaaattaactagtttataattttgataggttaattaacaactttagaaac 21010548  T
Q  118 ttg--------gtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgt 176  Q
    |||         ||||| |||||||||| |||||||||||| || | ||||||||| ||||||||||    
T  21010547 ttgtgaaacttattttttggatggtttagagtcttatgaaatttatgattttgcaagttaattttgt 21010481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 15381286 - 15381145
Alignment:
Q  47 ctttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac---ttttgaaacttggtttttcggatggtttaaagtct 143  Q
    |||||||||| |||||| |||||| ||||||||| ||||||||||||||||| |||||||||   ||| |||||||| ||||| |||||| ||| || ||    
T  15381286 ctttagaagggttgaacgtttgaagaaattaacttgtttattttttggatagttttattaacaattttagaaacttgcttttttggatggcttagagact 15381187  T
Q  144 tatgaaacttctaattttgcaaattaa-ttttgtattttgat 184  Q
    || ||||||| | ||||||   ||||| ||||||||||||||    
T  15381186 taagaaacttatgattttgtgcattaatttttgtattttgat 15381145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 16439105 - 16439155
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  16439105 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 16439155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 33640969 - 33640919
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  33640969 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 33640919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 12029257 - 12029314
Alignment:
Q  12 gagaagaaaacaccgatgataatgatattctggaactttagaaggattgaacttttga 69  Q
    |||| ||| ||||||||||||||||| || || |||||||||| ||||||||||||||    
T  12029257 gagatgaagacaccgatgataatgatgttatgaaactttagaatgattgaacttttga 12029314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 28900522 - 28900477
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  28900522 cttttgaagaaattaactagtttattttttagatagttttattaac 28900477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 2607312 - 2607362
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||||||||||||||||||||||| |||||| ||||| ||| |||||    
T  2607312 ttgaccttttgaaaaaattaactagtttcttttttagatagtttttttaac 2607362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 24194881 - 24194926
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| ||||||||||||||||||||| ||||| |||| ||||    
T  24194881 cttttgaagaaattaactagtttattttttagatagttttaataac 24194926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 36196084 - 36195939
Alignment:
Q  48 tttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt---aacttt-----tgaaacttg-gtttttcggatggtttaa 138  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||   ||||||     |||||||||  ||||| ||||||||||     
T  36196084 tttagaagggttgaacttttgaagaaattaactagtttattttttggatagttttattaacaactttatatgtgaaacttgctttttttggatggtttag 36195985  T
Q  139 agtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    ||||||||||| ||| | ||||||||| |||| ||| |||||||||    
T  36195984 agtcttatgaatcttatgattttgcaagttaaatttttattttgat 36195939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 31913806 - 31913930
Alignment:
Q  72 aaattaactagtttattttttggataggtttattaac------------ttttgaaacttg-gtttttcggatggtttaaagtcttatgaaacttctaat 158  Q
    |||||||||||||||||||||||||||||||||||||            || ||||||||| |||||| |||||||||| ||||||||||||||| |||     
T  31913806 aaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaacttgtgttttttggatggtttagagtcttatgaaacttataa- 31913904  T
Q  159 tttgcaaattaattttgtattttgat 184  Q
    ||||||| ||||||||||||||||||    
T  31913905 tttgcaagttaattttgtattttgat 31913930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 15286201 - 15286140
Alignment:
Q  47 ctttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  15286201 ctttcgaaggattgaacttttgaagaaattaacttgtttattttttggatagttttattaac 15286140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 16497548 - 16497471
Alignment:
Q  106 aacttttgaaacttggtttttcggatggtttaaagtcttatgaaacttctaattttgcaaattaattttgtattttgat 184  Q
    ||||| ||||||||| ||||| |||||||| | ||||||||||||||| | ||||||||| ||||||||||||||||||    
T  16497548 aacttgtgaaacttgcttttttggatggtt-agagtcttatgaaacttatgattttgcaagttaattttgtattttgat 16497471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 28622925 - 28622847
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || |||||||||||||| ||||| |||| ||| |||||| ||||||| |||||||||||| ||||||    
T  28622925 gatgagaatgatgttatggaactttagaag-attgacctttcgaagaaattacctagtttgttttttggatagttttatt 28622847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 29716597 - 29716548
Alignment:
Q  58 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaa 107  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  29716597 ttgaccttttgaagaaattaactagtttattttttagatagttttattaa 29716548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 5650530 - 5650452
Alignment:
Q  26 gatgataatgatattctggaactttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttatt 105  Q
    ||||| |||||| || ||||||||||||| |||||| |||||||| |||||| ||| ||| |||||| ||||| ||||||    
T  5650530 gatgagaatgatgttatggaactttagaa-gattgaccttttgaagaaattacctaatttgtttttttgatagttttatt 5650452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 38227 - 38287
Alignment:
Q  48 tttagaaggattgaacttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||    
T  38227 tttagaaggattaaacttttgaagaaattaactagtttattttttgaatagttttattaac 38287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 9272 - 9317
Alignment:
Q  63 cttttgaaaaaattaactagtttattttttggataggtttattaac 108  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  9272 cttttgaagaaattaactagtttattttttagatagttttattaac 9317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University