View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10722_low_7 (Length: 404)

Name: NF10722_low_7
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10722_low_7
NF10722_low_7
[»] chr4 (4 HSPs)
chr4 (20-391)||(6612708-6613079)
chr4 (25-368)||(27014841-27015184)
chr4 (43-352)||(42329402-42329711)
chr4 (279-356)||(25176988-25177065)
[»] scaffold0381 (1 HSPs)
scaffold0381 (25-368)||(4599-4942)
[»] chr8 (1 HSPs)
chr8 (49-391)||(29383150-29383492)
[»] chr3 (3 HSPs)
chr3 (21-344)||(54565320-54565644)
chr3 (25-158)||(12530143-12530276)
chr3 (268-370)||(44491428-44491530)
[»] chr5 (1 HSPs)
chr5 (42-314)||(22789884-22790156)
[»] chr2 (1 HSPs)
chr2 (22-297)||(45009972-45010247)
[»] chr1 (2 HSPs)
chr1 (47-150)||(41327593-41327696)
chr1 (47-150)||(41337824-41337927)
[»] chr6 (6 HSPs)
chr6 (139-349)||(11609151-11609361)
chr6 (66-150)||(20916428-20916512)
chr6 (73-150)||(20916791-20916868)
chr6 (109-172)||(17395936-17395999)
chr6 (267-361)||(17395751-17395845)
chr6 (64-150)||(20926361-20926447)
[»] chr7 (3 HSPs)
chr7 (190-302)||(3208804-3208916)
chr7 (232-389)||(23159480-23159637)
chr7 (136-323)||(8866007-8866194)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 6612708 - 6613079
Alignment:
Q  20 tgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaat 119  Q
    ||||||||| ||||||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6612708 tgggtagcccgagcgcaactcctgatttaaaatatctccttcagcacttcaatccggacgtactcttcttaagtgagacactagtatcccgaaataaaat 6612807  T
Q  120 tgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaat 219  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6612808 tgaagttttacgttacttgcttggttttgattcctgtttttccgttgattgcaccggtaggagtggtggccttgctttattttggcgtacctcttctaat 6612907  T
Q  220 tgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatg 319  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612908 tgcatgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatg 6613007  T
Q  320 ggggacgtaggagagctgcgtgggagtttcttcgtcagttgtctaatcaatatgcagatccttggtgtatct 391  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6613008 gggaacgtaggagagctgcgtgggagtttcttcgtcagttgtctaatcaatatgcagatccttggtgtatct 6613079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 368
Target Start/End: Complemental strand, 27015184 - 27014841
Alignment:
Q  25 agcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacg 124  Q
    |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||| | ||    |||||||||||||| |    
T  27015184 agcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttttaagtgagacattggttcgccgaaataaaattgaag 27015085  T
Q  125 ttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcac 224  Q
    |||| || || ||||| ||||||||||| |||||||| ||||||||||||  ||| || ||||| |||||||||||  |||| || |||||||||||       
T  27015084 tttttcgatatttgctcggttttgattcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttattccggcgcacttcttctaattgtca 27014985  T
Q  225 gcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatggggga 324  Q
     ||||  |||||||| || ||||| ||||| |||||| ||   || |||||||||||| |||||||||||||||| ||||||||||||||  | ||||||    
T  27014984 acttgcaaattattccaacaatcacattaccgttgaaattaccgactctgttcatggtccttggagactcaccggatactacgggtaccctgaaggggga 27014885  T
Q  325 cgtaggagagctgcgtgggagtttcttcgtcagttgtctaatca 368  Q
    |||||| |   ||||||||| || ||||| ||||| | ||||||    
T  27014884 cgtaggcgtcttgcgtgggatttccttcgacagttatgtaatca 27014841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 352
Target Start/End: Original strand, 42329402 - 42329711
Alignment:
Q  43 gatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttg 142  Q
    |||||||| || || ||||| ||||||||||||||| |  | || |||||||||||| ||||    || ||||||||||| |  ||  ||||  | ||||    
T  42329402 gatttaaagtacctagttcggcacttcaatccggacctcttatttttaagtgagacattagtccaccgtaataaaattgaagaattatgttatgttcttg 42329501  T
Q  143 gttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaa 242  Q
    ||||| | ||||||||||| |||||  | |||| ||| || || || |||||||| ||||| |  || |||  ||||||    ||| || ||||||| ||    
T  42329502 gttttaactcctgtttttctgttgaccgaaccggtagaagcggcggacttgctttcttttgacacacttctcttaattgtcaacttattgattattcaaa 42329601  T
Q  243 taatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgg 342  Q
    ||| ||||| ||||||||  || ||||||||  ||   || |||||| ||| || || ||||| |||||||| ||||||||||||||| | |||||||||    
T  42329602 taaccatataacagttgagattgttgattctaatctgcgtccttggaaacttactggctactatgggtaccctaatgggggacgtaggcgtgctgcgtgg 42329701  T
Q  343 gagtttcttc 352  Q
    ||||||||||    
T  42329702 gagtttcttc 42329711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 25177065 - 25176988
Alignment:
Q  279 tggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtca 356  Q
    |||||||| |||||||||  | |||||| |||||||||||||||||| |||| | ||||| ||||| |||| ||||||    
T  25177065 tggtacttagagactcacatgctactacaggtaccccaatgggggacataggcgtgctgcctgggactttcctcgtca 25176988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 4599 - 4942
Alignment:
Q  25 agcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacg 124  Q
    |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||| | ||    |||||||||||||| |    
T  4599 agcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttttaagtgagacattggttcgccgaaataaaattgaag 4698  T
Q  125 ttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcac 224  Q
    |||| || || ||||| ||||||||||| |||||||| ||||||||||||  ||| || ||||| |||||||||||  |||| || |||||||||||       
T  4699 tttttcgatatttgctcggttttgattcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttattccggcgcacttcttctaattgtca 4798  T
Q  225 gcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatggggga 324  Q
     ||||  |||||||| || ||||| ||||| |||||| ||   || |||||||||||| |||||||||||||||| ||||||||||||||  | ||||||    
T  4799 acttgcaaattattccaacaatcacattaccgttgaaattaccgactctgttcatggtccttggagactcaccggatactacgggtaccctgaaggggga 4898  T
Q  325 cgtaggagagctgcgtgggagtttcttcgtcagttgtctaatca 368  Q
    |||||| |   ||||||||| || ||||| ||||| | ||||||    
T  4899 cgtaggcgtcttgcgtgggatttccttcgacagttatgtaatca 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 391
Target Start/End: Original strand, 29383150 - 29383492
Alignment:
Q  49 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttg 148  Q
    ||||| ||||||||  ||||||||  |||| |||| || |||||||||||||||||    |||||||||||||| | ||| ||||| ||||| |||||||    
T  29383150 aaatacctcgttcgatacttcaatatggacctactatttttaagtgagacactagtccaccgaaataaaattgaagatttacgttatttgctgggttttg 29383249  T
Q  149 attcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatca 248  Q
    |||| || ||||  |||||| |||||| |||  | || || ||||||||||| ||||| || |||  | ||||    |||||||||| ||||||||||||    
T  29383250 attcttgcttttatgttgatcgcaccggtagtggaggcggtcttgctttattgtggcgcacttctcttcattgtcaacttgttaatttttctaataatca 29383349  T
Q  249 tattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagttt 348  Q
     |||||  ||||| || |||| | ||||| ||||   |||| |||||||| ||||||| ||||||| |||||| |||||||| | ||| ||||||| |||    
T  29383350 cattactattgaaattgttgactatgttcttggtttatggatactcaccgattactacaggtaccctaatgggcgacgtaggcgtgctacgtgggacttt 29383449  T
Q  349 cttcgtcagttgtctaatcaatatgcagatccttggtgtatct 391  Q
    || ||| | || |||  |||| |||||  ||| ||||||||||    
T  29383450 ctccgtaatttatctggtcaaaatgcaagtccatggtgtatct 29383492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 54565644 - 54565320
Alignment:
Q  21 gggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacg-tactcttcttaagtgagacactagtatcacgaaataaaat 119  Q
    ||||||||  ||||||| |||||||||||| ||  | ||||| ||||| |||||||||  || | || |||||||||||| ||||    || ||||||||    
T  54565644 gggtagcccaagcgcaattcttgatttaaagtacatagttcggcactttaatccggaccctattatttttaagtgagacattagtccatcgtaataaaat 54565545  T
Q  120 tgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaat 219  Q
    ||| | | | |||||| |||||| ||||||||  |||||||| |||||||| || | ||| |||||||||||||| |||||||||||| |||||| |||     
T  54565544 tgaagctctacgttacgtgcttgattttgatttttgtttttctgttgattgtactggtagaagtggtggccttgcattattttggcgtgcctcttttaac 54565445  T
Q  220 tgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatg 319  Q
    ||   | |||  ||||  || |||||||||||| | |||||  || ||||||| |||||||||  ||||||  |||  || ||||||||||||||  | |    
T  54565444 tgtcagattgcaaattgctcaaataatcatatttctgttgacgttgttgattccgttcatggtgtttggaggttcattggctactacgggtaccctgaag 54565345  T
Q  320 ggggacgtaggagagctgcgtggga 344  Q
    |||||| |||| |||| ||||||||    
T  54565344 ggggacataggcgagcagcgtggga 54565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 12530276 - 12530143
Alignment:
Q  25 agcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatca-cgaaataaaattgac 123  Q
    |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||||||||||| |||||| ||||| | || ||| ||||||||||||||     
T  12530276 agcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacgtactctttttaagtcagacattggt-tcaccgaaataaaattgaa 12530178  T
Q  124 gttttccgttacttgcttggttttgattcctgttt 158  Q
    | ||| || || ||||| ||||||||||| |||||    
T  12530177 gcttttcgatatttgctcggttttgattcttgttt 12530143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 44491428 - 44491530
Alignment:
Q  268 gattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtcagttgtctaatc 367  Q
    |||||||||| ||||   ||||| |||||||||||||||||||||||  |  |||||||| | |||  ||||||||| || |||||| | ||||||||||    
T  44491428 gattctgttcttggtttgtggaggctcaccggttactacgggtaccctgaacggggacgtcgaagacttgcgtgggatttccttcgtaatttgtctaatc 44491527  T
Q  368 aat 370  Q
    |||    
T  44491528 aat 44491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 314
Target Start/End: Complemental strand, 22790156 - 22789884
Alignment:
Q  42 tgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgctt 141  Q
    ||||||||| || || ||||| |||||||||||||   || | ||||||||||||||| ||||    || ||||||||||| | ||| ||| || |||||    
T  22790156 tgatttaaagtacctagttcggcacttcaatccggttctattattcttaagtgagacattagtccaccgtaataaaattgaagctttacgtcacctgctt 22790057  T
Q  142 ggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattcta 241  Q
    ||||||||||  || ||||| ||||||||    | ||| |||||||||||||| |||||||||||  | |||| ||| ||   | |||| || ||||| |    
T  22790056 ggttttgattgatgcttttctgttgattgttatggtagaagtggtggccttgcattattttggcgcgcttcttttaactgtcagattgtaaactattcaa 22789957  T
Q  242 ataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccc 314  Q
    ||||||||||  | || ||  || ||||||||||||| |||  ||||||| ||||||||||||||||||||||    
T  22789956 ataatcatatgtctgtagacgttgttgattctgttcaaggtgtttggagattcaccggttactacgggtaccc 22789884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 45009972 - 45010247
Alignment:
Q  22 ggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattg 121  Q
    ||||||| |||||||| ||  || || ||||| ||  |||| ||||| ||||||||| | |||||||||||||||||  ||||    |||||||||||||    
T  45009972 ggtagcccgagcgcaattcccgacttgaaatacctaattcggcactttaatccggacatcctcttcttaagtgagactttagtccatcgaaataaaattg 45010071  T
Q  122 acgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattg 221  Q
    | |  ||   |||||| |||||||||||||| ||| | || |||||  |||| |  ||  |||| || ||||| |||||||||| |    |||||| |||    
T  45010072 aagaattattttacttacttggttttgattcttgtatctcagttgaccgcactggaagaggtgggggtcttgccttattttggcatcatacttctagttg 45010171  T
Q  222 cacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcacc 297  Q
    ||  |||||| ||| |||||||||||||||||| |||||| || |||||||||||| |||| ||||||||||||||    
T  45010172 caatcttgttgatttttctaataatcatattactgttgaaattattgattctgttcttggtccttggagactcacc 45010247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 41327593 - 41327696
Alignment:
Q  47 taaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttt 146  Q
    ||||||| || ||||  ||||||||||||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||    
T  41327593 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 41327692  T
Q  147 tgat 150  Q
    ||||    
T  41327693 tgat 41327696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 41337824 - 41337927
Alignment:
Q  47 taaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttt 146  Q
    ||||||| || ||||  ||||||||||||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||    
T  41337824 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 41337923  T
Q  147 tgat 150  Q
    ||||    
T  41337924 tgat 41337927  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 349
Target Start/End: Complemental strand, 11609361 - 11609151
Alignment:
Q  139 cttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattatt 238  Q
    ||||||||||| || |||||||| |||||  | |||| ||| || || || |||||||| |||||||| || |||  ||||||    ||| || ||||||    
T  11609361 cttggttttgactcatgtttttctgttgaccgaaccggtagaagcggcggtcttgctttcttttggcgcacttctcttaattgtcaacttattgattatt 11609262  T
Q  239 ctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgc 338  Q
    | ||||| ||||| ||| ||||  || |||||| |  ||  ||| |||||| ||| ||||| |||||||||||||| ||||||||||||||| | | |||    
T  11609261 caaataaccatataacaattgagattattgattataatctgggtccttggaaacttaccggctactacgggtaccctaatgggggacgtaggcgtgttgc 11609162  T
Q  339 gtgggagtttc 349  Q
    |||||||||||    
T  11609161 gtgggagtttc 11609151  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 20916428 - 20916512
Alignment:
Q  66 cttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 150  Q
    |||||| |||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916428 cttcaacccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916512  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 20916791 - 20916868
Alignment:
Q  73 ccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 150  Q
    |||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916791 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916868  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 17395999 - 17395936
Alignment:
Q  109 cgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgca 172  Q
    |||||||||||||| ||||| ||| || ||||||||||| |||| ||||||||  |||||||||    
T  17395999 cgaaataaaattgaagtttttcgtaacatgcttggtttttattcttgtttttcttttgattgca 17395936  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 17395845 - 17395751
Alignment:
Q  267 tgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtaggagagctgcgtgggagtttcttcgtcagttgt 361  Q
    ||||||||||| ||||   |||||||||||||| ||||||||||| ||  |||||| |  |||  | ||||||||||| ||||||||||| ||||    
T  17395845 tgattctgttcttggtttatggagactcaccggatactacgggtatccttatggggaagttagacgtgctgcgtgggattttcttcgtcatttgt 17395751  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 20926361 - 20926447
Alignment:
Q  64 cacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 150  Q
    ||||||||||| ||| | |||||||||||||||| | ||||    |||||||||||||| | ||  ||||| |||||||||||||||    
T  20926361 cacttcaatccagacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagattgacgttatttgcttggttttgat 20926447  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 3208916 - 3208804
Alignment:
Q  190 cttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattttttgattctgttcatggtacttgga 289  Q
    ||||||||||||||||||| |||||   ||||||  |||||| ||| |||||  || |||||||| |||||| || |||||  ||||| ||||| |||||    
T  3208916 cttgctttattttggcgtaactctttacattgcagacttgttgatttttctagcaaccatattactgttgaaattattgataatgttcttggtatttgga 3208817  T
Q  290 gactcaccggtta 302  Q
    |||| ||||||||    
T  3208816 gacttaccggtta 3208804  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 389
Target Start/End: Original strand, 23159480 - 23159637
Alignment:
Q  232 aattattctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatgggggacgtagga 331  Q
    |||||||||||||| || ||||| |||||| || |||| |||  || |||| ||||||| || | ||| ||||| |||||||||||||||| || ||||     
T  23159480 aattattctaataaccacattaccgttgaaattgttgactctactcttggttcttggaggcttatcggctactatgggtaccccaatggggaacataggc 23159579  T
Q  332 gagctgcgtgggagtttcttcgtcagttgtctaatcaatatgcagatccttggtgtat 389  Q
     || || || ||| || ||  || | |||||| | |||||||||| ||||||||||||    
T  23159580 aagttgtgtaggatttcctctgtaacttgtctgaacaatatgcaggtccttggtgtat 23159637  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 323
Target Start/End: Complemental strand, 8866194 - 8866007
Alignment:
Q  136 ttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaatt 235  Q
    ||||||||||||||||  ||| |||| |||||  ||||||  ||  |||| || ||||||||||| ||||| || ||||  ||| |    |||||  |||    
T  8866194 ttgcttggttttgattgttgtatttctgttgaccgcaccggcagcggtgggggtcttgctttattctggcgcacttctttaaatggtcaacttgtcgatt 8866095  T
Q  236 attctaataatcatattacagttgaattttttgattctgttcatggtacttggagactcaccggttactacgggtaccccaatggggg 323  Q
    | || ||||||||||| ||  ||||| || |||| ||||||| |||||| |||||||| ||||| |||||||| || ||||| |||||    
T  8866094 actcaaataatcatatcactattgaaattgttgactctgttcttggtacatggagacttaccggctactacggttatcccaaaggggg 8866007  T

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