View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10722_low_9 (Length: 382)
Name: NF10722_low_9
Description: NF10722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10722_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5595201 - 5595287
Alignment:
| Q |
1 |
aaaatcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcctc |
87 |
Q |
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| T |
5595201 |
aaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
5595287 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5601394 - 5601480
Alignment:
| Q |
1 |
aaaatcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcctc |
87 |
Q |
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| T |
5601394 |
aaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
5601480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2893423 - 2893337
Alignment:
| Q |
1 |
aaaatcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcctc |
87 |
Q |
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| T |
2893423 |
aaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaactctttaattcctc |
2893337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42784171 - 42784086
Alignment:
| Q |
1 |
aaaatcttgattagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcct |
86 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42784171 |
aaaatcttgattagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcct |
42784086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 48479731 - 48479808
Alignment:
| Q |
10 |
attagcaagtttaccattttacccttcaaaggaaaagacataattatcctttgttaatttgtaaccctttaattcctc |
87 |
Q |
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|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48479731 |
attagcaagtttaccattttgcccttcaagggaaaagacacaattatcctttgttaatttgtaaccctttaattcctc |
48479808 |
T |
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